View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9732_low_5 (Length: 445)
Name: NF9732_low_5
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_low_5 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 11797861 - 11798093
Alignment:
| Q |
14 |
gcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaata |
113 |
Q |
| |
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||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||| ||| |
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| T |
11797861 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatg |
11797960 |
T |
|
| Q |
114 |
tttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
213 |
Q |
| |
|
|||||| |||||||||| |||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11797961 |
tttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
11798060 |
T |
|
| Q |
214 |
tattttggttagttcaattcttcacttttttag |
246 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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|
| T |
11798061 |
tattatggttagttcaattcttcacttttttag |
11798093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 11701817 - 11702031
Alignment:
| Q |
14 |
gcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaata |
113 |
Q |
| |
|
||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||| |
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|
| T |
11701817 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
11701916 |
T |
|
| Q |
114 |
tttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
213 |
Q |
| |
|
||||||||||||| ||| |||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
11701917 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatcta |
11702016 |
T |
|
| Q |
214 |
tattttggttagttc |
228 |
Q |
| |
|
||| ||||| ||||| |
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|
| T |
11702017 |
tatcttggtcagttc |
11702031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 11696020 - 11696229
Alignment:
| Q |
14 |
gcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaata |
113 |
Q |
| |
|
||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||| |||| |
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|
| T |
11696020 |
gcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaata |
11696119 |
T |
|
| Q |
114 |
tttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
213 |
Q |
| |
|
||||||||||||||||| |||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11696120 |
tttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatgcttgcttctctcatcta |
11696219 |
T |
|
| Q |
214 |
tattttggtt |
223 |
Q |
| |
|
||| |||||| |
|
|
| T |
11696220 |
tatattggtt |
11696229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 11675924 - 11676132
Alignment:
| Q |
14 |
gcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaata |
113 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||| |
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|
| T |
11675924 |
gcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaata |
11676023 |
T |
|
| Q |
114 |
tttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
213 |
Q |
| |
|
||||||||||| |||| |||||||||| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
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|
| T |
11676024 |
tttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctctcattta |
11676123 |
T |
|
| Q |
214 |
tattttggt |
222 |
Q |
| |
|
||| ||||| |
|
|
| T |
11676124 |
tatcttggt |
11676132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 11684203 - 11684411
Alignment:
| Q |
14 |
gcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaata |
113 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||| |
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|
| T |
11684203 |
gcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaata |
11684302 |
T |
|
| Q |
114 |
tttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
213 |
Q |
| |
|
||||||||||| |||| |||||||||| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
11684303 |
tttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctctcattta |
11684402 |
T |
|
| Q |
214 |
tattttggt |
222 |
Q |
| |
|
||| ||||| |
|
|
| T |
11684403 |
tatcttggt |
11684411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 11778999 - 11779227
Alignment:
| Q |
14 |
gcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaata |
113 |
Q |
| |
|
||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
11778999 |
gcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatg |
11779098 |
T |
|
| Q |
114 |
tttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatcta |
213 |
Q |
| |
|
||||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
11779099 |
tttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattcttttcttggacgctatcacacaatcatacttgcttctcttatcta |
11779198 |
T |
|
| Q |
214 |
tattttggttagttcaattcttcactttt |
242 |
Q |
| |
|
| | |||||| |||| |||||||||||| |
|
|
| T |
11779199 |
tgtattggttggttctgttcttcactttt |
11779227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 243 - 423
Target Start/End: Original strand, 11786155 - 11786337
Alignment:
| Q |
243 |
ttagtattgtagaattatctccttaacaaaaagtattgtagcattatcactttattattataaaagttattcatgatgaaagacttaagttatgcaaggg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||| |||||| |||||||| ||||||| |
|
|
| T |
11786155 |
ttagtattgtagaattatctccttaacaaaa-gtattgtagcattatcactctataactataaaagttactcagaccgaaagatttaagttacgcaaggg |
11786253 |
T |
|
| Q |
343 |
tacttttgtctttttagttgggagtga---atatttgttgcgagaagagcaattttcttaggattatgtaacatgcatagagaa |
423 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11786254 |
tatttttgtcttttcagttgggagtgagaaatatttgttgcaagaagagcaattttcttaggaatatgtaacatgcatagagaa |
11786337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 243 - 423
Target Start/End: Original strand, 11798322 - 11798504
Alignment:
| Q |
243 |
ttagtattgtagaattatctccttaacaaaaagtattgtagcattatcactttattattataaaagttattcatgatgaaagacttaagttatgcaaggg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||| |||||| |||||||| ||||||| |
|
|
| T |
11798322 |
ttagtattgtagaattatctccttaacaaaa-gtattgtagcattatcactctataactataaaagttactcagaccgaaagatttaagttacgcaaggg |
11798420 |
T |
|
| Q |
343 |
tacttttgtctttttagttgggagtga---atatttgttgcgagaagagcaattttcttaggattatgtaacatgcatagagaa |
423 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11798421 |
tatttttgtcttttcagttgggagtgagaaatatttgttgcaagaagagcaattttcttaggaatatgtaacatgcatagagaa |
11798504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 16461 - 16690
Alignment:
| Q |
13 |
agcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaat |
112 |
Q |
| |
|
||||||||||||||||| | ||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
16461 |
agcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaat |
16560 |
T |
|
| Q |
113 |
atttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatct |
212 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
16561 |
atttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgattcttttcttggacgctatcacacaatcatacttgcttctcttatct |
16660 |
T |
|
| Q |
213 |
atattttggttagttcaattcttcactttt |
242 |
Q |
| |
|
|||| |||||| |||| |||||||||||| |
|
|
| T |
16661 |
atatattggttggttctgttcttcactttt |
16690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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