View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9732_low_8 (Length: 342)

Name: NF9732_low_8
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9732_low_8
NF9732_low_8
[»] chr7 (1 HSPs)
chr7 (18-332)||(36357228-36357542)
[»] chr1 (3 HSPs)
chr1 (27-332)||(35650201-35650506)
chr1 (27-332)||(40049493-40049798)
chr1 (120-238)||(12278548-12278666)
[»] chr3 (1 HSPs)
chr3 (27-332)||(41271421-41271726)
[»] chr5 (2 HSPs)
chr5 (59-332)||(8709717-8709990)
chr5 (260-322)||(20924875-20924937)
[»] chr4 (1 HSPs)
chr4 (263-325)||(30144921-30144983)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 36357542 - 36357228
Alignment:
Q  18 acattagtctgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36357542 acattagtctgactccgaactcttgaagtgcctctgtttgaaagccaattgtcctgccatatttttactttctccccattcccaattctccatttgcttc 36357443  T
Q  118 ccttttcaattacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacg 217  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||    
T  36357442 ctttttcaattacatctttagcactcatgatactcctccaagcatagctaggtgagaaacccatctttgcctccataaaacttccatgagggtgataccg 36357343  T
Q  218 gcttttaaagactttccccataagcgtattctctcctgttaggagcctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaa 317  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36357342 gcttttaaagactttccccatgagcatattctctcctgttaggagcctccaacaatgtttcccaagaaatgctttgttgaaatcactaaatcctcggaaa 36357243  T
Q  318 cccattccgcctttg 332  Q
    ||||| |||||||||    
T  36357242 cccatcccgcctttg 36357228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 332
Target Start/End: Original strand, 35650201 - 35650506
Alignment:
Q  27 tgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaa 126  Q
    |||||| | |||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| || |||||||    
T  35650201 tgactctgcactcttgaagtgcctctgtttggaagccagttgtcatgccaaattctgactttctctccatttccaattctccatttgctacctttttcaa 35650300  T
Q  127 ttacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaa 226  Q
    |||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| ||| ||||| || |||||||  |||||||||||    
T  35650301 ttacatctctagcactcatgatactcctccaagcatagctaggagaaaaacccatcttggcctccaaaaagcttccccgcgggtgataccggcttttaaa 35650400  T
Q  227 gactttccccataagcgtattctctcctgttaggagcctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaacccattccg 326  Q
    |||||||||||| |||||||  ||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||| |||| |||    
T  35650401 gactttccccattagcgtatcttctccggtcaggagcctccaacaatgttttccaagaagcgctttgttgaaatcactaaaacctcgaaaatccatcccg 35650500  T
Q  327 cctttg 332  Q
    ||||||    
T  35650501 cctttg 35650506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 27 - 332
Target Start/End: Complemental strand, 40049798 - 40049493
Alignment:
Q  27 tgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaa 126  Q
    |||||| | ||||||||| |||||||||||  |||||| ||||||||||| ||| |||||||||| ||||| ||||||  ||||||||| || |||||||    
T  40049798 tgactctgcactcttgaattgcctctgttttgaagccagttgtcatgccaaattctgactttctctccatttccaatttgccatttgctacctttttcaa 40049699  T
Q  127 ttacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaa 226  Q
    |||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| ||||||||| |  |||||||  |||||||||||    
T  40049698 ttacatctctagcactcatgatactcctccaagcatagctaggagaaaaacccatcttggcctccaaaaaacttccccttgggtgatatcggcttttaaa 40049599  T
Q  227 gactttccccataagcgtattctctcctgttaggagcctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaacccattccg 326  Q
    |||||||||||| |||||||  || || || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||    
T  40049598 gactttccccattagcgtatcttcgccggtcaggagcctccaacaatgttttccaagaagcgctttgttgaaatcactaaaacctcgaaaacccatcccg 40049499  T
Q  327 cctttg 332  Q
    ||||||    
T  40049498 cctttg 40049493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 12278548 - 12278666
Alignment:
Q  120 ttttcaattacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggc 219  Q
    |||||||||||  || | |||||||||||||| ||||| |||||||||||   | |||| | |||||| ||||| ||||| || | ||| ||||  ||||    
T  12278548 ttttcaattactactctggcactcatgatactcctccaggcatagctaggcatgtaacctacttttgcatccatgaaactccctcaaggatgatagcggc 12278647  T
Q  220 ttttaaagactttccccat 238  Q
    |||| || |||||||||||    
T  12278648 ttttgaatactttccccat 12278666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 27 - 332
Target Start/End: Original strand, 41271421 - 41271726
Alignment:
Q  27 tgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaa 126  Q
    |||||| | ||||||||| |||||||||||| |||||| ||||||||||| ||| |||||||||| ||||| ||||||  ||||||||| || |||||||    
T  41271421 tgactctgcactcttgaattgcctctgtttggaagccagttgtcatgccaaattctgactttctctccatttccaatttgccatttgctacctttttcaa 41271520  T
Q  127 ttacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaa 226  Q
    |||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| ||||||||| |  |||||||  || ||||||||    
T  41271521 ttacatctctagcactcatgatactcctccaagcatagctaggagaaaaacccatcttggcctccaaaaaacttccccttgggtgataccgacttttaaa 41271620  T
Q  227 gactttccccataagcgtattctctcctgttaggagcctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaacccattccg 326  Q
    |||||||||||| |||||||  || || || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||    
T  41271621 gactttccccattagcgtatcttcgccggtcaggagcctccaacaatgttttccaagaagcgctttgttgaaatcactaaaacctcgaaaacccatcccg 41271720  T
Q  327 cctttg 332  Q
    ||||||    
T  41271721 cctttg 41271726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 332
Target Start/End: Original strand, 8709717 - 8709990
Alignment:
Q  59 aagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaattacatctttagcactcatgatacttctccaa 158  Q
    ||||||||| ||||| || ||  ||||||  |||||||| |||||||| ||||| ||||| ||    |  || ||| |||||||||||||||| |||||     
T  8709717 aagccaattatcatgtcagatcctgacttcttccccatttccaattcttcatttacttcctttcatgacaacttctctagcactcatgatactcctccac 8709816  T
Q  159 gcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaagactttccccataagcgtattctctcctgtta 258  Q
    |||||||  |||||||| ||||  ||||| | ||  || ||||| | ||||||||  || || ||||| |  |||||||||||||| |  ||||| ||      
T  8709817 gcatagccgggtgagaagcccaactttgcgttcaagaagcttcctctagggtgatatcgactcttaaaaatcttccccataagcgtgtcttctccggtcg 8709916  T
Q  259 ggagcctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaacccattccgcctttg 332  Q
     ||||||||| || ||||| || |||||||||||||| ||||||||||| |||| ||||||||| || ||||||    
T  8709917 agagcctccagcagtgttttccgagaagtgctttgttaaaatcactaaaccctcagaaacccatcccccctttg 8709990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 20924875 - 20924937
Alignment:
Q  260 gagcctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaacccat 322  Q
    |||||||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  20924875 gagcctccaacagtgtttttcgagaagtgctttgttaaaatcactaaaccctcgaaaacccat 20924937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 30144921 - 30144983
Alignment:
Q  263 cctccaacaatgtttcccaagaagtgctttgttgaaatcactaaatcctcggaaacccattcc 325  Q
    ||||||||| ||||| |||||||  |||||| ||||||||||||| ||||| |||||||||||    
T  30144921 cctccaacattgtttaccaagaaaggctttgctgaaatcactaaagcctcgaaaacccattcc 30144983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University