View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9732_low_9 (Length: 337)
Name: NF9732_low_9
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 293343 - 293668
Alignment:
| Q |
1 |
atattttcacgacataattagggtatataaaataaacctgccataggattggtgaaaagaacgcagcaattggcgccggtgggggacttggtgtttcttc |
100 |
Q |
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| T |
293343 |
atattttcacgacataattagggtatataaaataaacctgccataggattggtgaaaagaacgcagcaattggcgccggtgggggacttggtgtttcttc |
293442 |
T |
|
| Q |
101 |
tgggagtacatagagttctggggggcaatagtcaggatccaaaagggtgcggtcgggaacataattctttccgatccgaaggtctgttgcagcaccaaaa |
200 |
Q |
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| T |
293443 |
tgggagtacatagagttctggggggcaatagtcaggatccaaaagggtgcggtcgggaacataattctttccgatccgaaggtctgttgcagcaccaaaa |
293542 |
T |
|
| Q |
201 |
tcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctgtatcatgaattttcttaagagaagtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293543 |
tcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctgtatcatgaattttcttaagagaagtaa |
293642 |
T |
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| Q |
301 |
ttatctggcgcatgatttgcttgatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
293643 |
ttatctggcgcatgatttgcttgatg |
293668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 326
Target Start/End: Complemental strand, 27492546 - 27492379
Alignment:
| Q |
159 |
acataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctc |
258 |
Q |
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| T |
27492546 |
acataattctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatctgccctttttttgtaacaaccaagttggaaggctttacatccc |
27492447 |
T |
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| Q |
259 |
tatgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatg |
326 |
Q |
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| T |
27492446 |
tgtgaacgatgccagtgtcgtgaattttcttaagagatgtaatgatttggcgcattatttgcttgatg |
27492379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 27507711 - 27507565
Alignment:
| Q |
174 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
273 |
Q |
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|||| ||| |||||||| ||||||||||||| || ||||||| | || |||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27507711 |
atcctaagatctgttgctgcaccaaaatcaacgaatttaatccgacctagttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27507612 |
T |
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| Q |
274 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgc |
320 |
Q |
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| T |
27507611 |
tgtcatgaattttcttaagagatgtaattatctggcgcattatttgc |
27507565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 326
Target Start/End: Complemental strand, 27495236 - 27495084
Alignment:
| Q |
174 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
273 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27495236 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27495137 |
T |
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| Q |
274 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatg |
326 |
Q |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||| |
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| T |
27495136 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatg |
27495084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 326
Target Start/End: Complemental strand, 27501894 - 27501742
Alignment:
| Q |
174 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
273 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27501894 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27501795 |
T |
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| Q |
274 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatg |
326 |
Q |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||| |
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| T |
27501794 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatg |
27501742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 326
Target Start/End: Complemental strand, 27516686 - 27516534
Alignment:
| Q |
174 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
273 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27516686 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27516587 |
T |
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| Q |
274 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatg |
326 |
Q |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||| |
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| T |
27516586 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatg |
27516534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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