View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_high_8 (Length: 328)
Name: NF9733_high_8
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 29157683 - 29158001
Alignment:
| Q |
1 |
ttagttgacgttgtcctgatggattggccagatgcatattagtagtggttttcataatgagtctatgtctaatttactactcccgtagaggctgttagtt |
100 |
Q |
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| T |
29157683 |
ttagttgacgttgtcttgatggattggccagatgcatattagtagtggttttcgtaatgggtctatgtctaatttactactcccgtagaggctgttagtt |
29157782 |
T |
|
| Q |
101 |
taattctttggtaaagcagtgtggcaaaaagataaatgtttcaaatcttcgattcttcaatggatgtctagtcatcttgcttgtttagccattggtggat |
200 |
Q |
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| T |
29157783 |
taattctttggtaaagcagtgtggcaaaaagataaatgtttcaaatcttcgattcttcaatggatgtctagtcatcttgcttgtttagccattggtggat |
29157882 |
T |
|
| Q |
201 |
tatttgatttagtctatgcagtggtagttttatatgattttgttcatctacatgttggaaaaacattatacttatgttaagtatacctttgagtcgatct |
300 |
Q |
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| T |
29157883 |
tatttgatttagtctatgtagtggtagttttatatgattttgttcatctacatgttggaaaaacattatacttatgttaagtatacctttgagtcgatct |
29157982 |
T |
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| Q |
301 |
gttcttagtttgttcatct |
319 |
Q |
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| T |
29157983 |
gttcttagtttgttcatct |
29158001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 28624907 - 28624755
Alignment:
| Q |
66 |
tgtctaatttactactcccgtagaggctgttagtttaattctttggtaaagcagtgtggcaaaaagataaatgtttcaaatcttcgattcttcaatggat |
165 |
Q |
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| T |
28624907 |
tgtctaatttactactcccgtacaggctgttagtttaattctttggtaaagcagtgtgggaaaaagaaaaatgtttcaaatatttgattgctcaatggat |
28624808 |
T |
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| Q |
166 |
gtctagtcatcttgcttgtttagccattggtggattatttgatttagtctatg |
218 |
Q |
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| T |
28624807 |
gtctaatcatcttgcttgtttcagcatttgtggattctttgatttaatctatg |
28624755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 11982217 - 11982143
Alignment:
| Q |
156 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtctatgcagtggtagttt |
230 |
Q |
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| T |
11982217 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtttatgcagtggtagttt |
11982143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 18770394 - 18770468
Alignment:
| Q |
156 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtctatgcagtggtagttt |
230 |
Q |
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|
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| T |
18770394 |
ttcaatggatgtctagtcatcttgcttgtttagccattggtggattatttgatttagtttatgcagtggtagttt |
18770468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 11981474 - 11981432
Alignment:
| Q |
229 |
tttatatgattttgttcatctacatgttggaaaaacattatac |
271 |
Q |
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| T |
11981474 |
tttatatgattttgttcatctacatgttggaaaaacgttatac |
11981432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 18771137 - 18771179
Alignment:
| Q |
229 |
tttatatgattttgttcatctacatgttggaaaaacattatac |
271 |
Q |
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| T |
18771137 |
tttatatgattttgttcatctacatgttggaaaaacgttatac |
18771179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 11981436 - 11981399
Alignment:
| Q |
282 |
tatacctttgagtcgatctgttcttagtttgttcatct |
319 |
Q |
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| T |
11981436 |
tatacctttgagtcgatctgttcttagtttgttcatct |
11981399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 18771175 - 18771212
Alignment:
| Q |
282 |
tatacctttgagtcgatctgttcttagtttgttcatct |
319 |
Q |
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| T |
18771175 |
tatacctttgagtcgatctgttcttagtttgttcatct |
18771212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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