View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9733_high_9 (Length: 285)

Name: NF9733_high_9
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9733_high_9
NF9733_high_9
[»] chr5 (1 HSPs)
chr5 (1-285)||(25702634-25702918)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 25702918 - 25702634
Alignment:
Q  1 aatcaatctcgttaaatggcggccattgcgactccatggcagattttttggacaaacaagataatgtaatttgtgaagggatgtccgtcgtggcggtgcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||    
T  25702918 aatcaatctcgttaaatggcggccattgcgactccatggcagattttttggacaaacaagataatgtaatttgtgaagggatgtctatcatggcgttgcc 25702819  T
Q  101 atagtccgcagtagcgtttttataattaatatggcagatttttagccttctatcatattctgcaatcaaccatccacgacattggtccaaagcatctaat 200  Q
    || ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |    
T  25702818 attgtccgcaatagtgtttttataaataatatggcagatttttagccttctatcatattctgcaatcaaccatccacaacattggtccaaagcacctagt 25702719  T
Q  201 tatagcaaattttcttcaaatagaactatccataccttctgtcagtgatattattctgaatcctctcttattagtattatcattt 285  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25702718 tatagcaaattttctacaaatagaactatccatactttctgtcagtgatattattctgaatcctctcttattagtattctcattt 25702634  T

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