View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_10 (Length: 396)
Name: NF9733_low_10
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 36013322 - 36013653
Alignment:
| Q |
18 |
aaaagatcaaacaagcatatgatgacaaatgatttgcaatttggcattgatgattattatagaatgttaaataacaataagaatcttgattagaaacaac |
117 |
Q |
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| T |
36013322 |
aaaagatcaaacaagcatatgatgacaaatgatttgcaatttggcattgatcattattatagaatgttaaataacaataagaatcttgattagaaacaac |
36013421 |
T |
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| Q |
118 |
ttgtttctatcaaggatgactcttaaaggaacgaaaggaagaggaataaggtggctccattccatagcccaattggatttagagggctccacggtcacta |
217 |
Q |
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| T |
36013422 |
ttgtttctaacaaggatgactcttaaaggaacgaaaggaagaggaataaggtggctccattccatagcccaattggatttagagggctccacggtcacta |
36013521 |
T |
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| Q |
218 |
gcttttcccttcaaaacaaacttcaactttgattctcttgaaagcttctttttgatctttattaatggctgctactttttataatgtgtaactaatgacg |
317 |
Q |
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| T |
36013522 |
gcttttcccttcaaaacaaacttcaactttgattctcttgaaagcttctttttgatctttattaatggctgctactttttacaatgtgtaactaatgacg |
36013621 |
T |
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| Q |
318 |
acaaaatcactcacaatttttatatcactttg |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36013622 |
acaaaatcactcacaatttttatatcactttg |
36013653 |
T |
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