View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_11 (Length: 388)
Name: NF9733_low_11
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 383
Target Start/End: Complemental strand, 23380193 - 23379835
Alignment:
| Q |
24 |
gggaggagctgcagctggaggagttggtgcatgttgaaaaaattccaatgaaatggactataggattattaaattactaagttctatgcatggcaagggt |
123 |
Q |
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| T |
23380193 |
gggaggagctgtagctggaggagttggtgcatgttgaaaaaattccaatgcaatggactataggattattaaattactaagttctatgcatggcaagggt |
23380094 |
T |
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| Q |
124 |
tgatttttatttagggtagtgcacacgagataggtatattgatttattctttgacggtatgattggccatatagatggaaatatcataattcactgatac |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23380093 |
tgatttttatttagggcagtgcacacgagataggtatattgatttattctttgacggtatgattggccatatagatggaaatatcataattcactgatac |
23379994 |
T |
|
| Q |
224 |
tggtagtatataatgtaatacttctcattcttttaannnnnnngcggttgtacttgtacattgtatacattacagtagcacaactttaaaagaaaatcta |
323 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379993 |
tggtagtatataatgtaatacttctcattcttttaa-ttttttgcggttgtacttgtacattgtatacattacagtagcacaactttaaaagaaaatcta |
23379895 |
T |
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| Q |
324 |
aataaagaacaacaaaacaaaacaccattggaaggaagctaaggagagacaacaccaaac |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379894 |
aataaagaacaacaaaacaaaacaccattggaaggaagctaaggagagacaacaccaaac |
23379835 |
T |
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