View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_12 (Length: 331)
Name: NF9733_low_12
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 7289955 - 7289641
Alignment:
| Q |
1 |
aaatgcaaagttgcccataatacagtggatgccgaaagcacaattttgaactattgtaaggtatcaaaataggtgcaacatacagaacaacaaaacattc |
100 |
Q |
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| T |
7289955 |
aaatgcaaagttgcccataatacagtggatgccggaagcacaatttcaaactattttaaggtatcaaaataggtgcaacatacaaaacaacaaaacattc |
7289856 |
T |
|
| Q |
101 |
atgagttaagtacaagtggtttagctatgcaaagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttga |
200 |
Q |
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| T |
7289855 |
atgagttaagtacaagtggtttagctatgcaaagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttga |
7289756 |
T |
|
| Q |
201 |
ggatgatgagaacaagcgagttaattttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttgtttgaacaatatccttattc |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7289755 |
ggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttgtttgaacactatccttattc |
7289656 |
T |
|
| Q |
301 |
tttccatgatcttca |
315 |
Q |
| |
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||||||||||||||| |
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| T |
7289655 |
tttccatgatcttca |
7289641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 132 - 315
Target Start/End: Original strand, 1196757 - 1196941
Alignment:
| Q |
132 |
aagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttgaggatgatgagaacaagcgagttaattttcta |
231 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
1196757 |
aagatggataaaaatttgcaacatccaataatatt-aattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttcta |
1196855 |
T |
|
| Q |
232 |
aagaacaataactcatcatttcttcaatgccaattgatctacattcttg-tttgaaca-atatccttattctttccatgatcttca |
315 |
Q |
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|||||||||||| |||||| |||||||||| |||||||||||||||||| |||||| | | |||||||||||||||||||||||| |
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| T |
1196856 |
aagaacaataacccatcatctcttcaatgctaattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttca |
1196941 |
T |
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