View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9733_low_15 (Length: 270)

Name: NF9733_low_15
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9733_low_15
NF9733_low_15
[»] chr7 (2 HSPs)
chr7 (17-254)||(45484970-45485206)
chr7 (65-254)||(7115644-7115833)
[»] chr8 (3 HSPs)
chr8 (17-254)||(22717040-22717277)
chr8 (177-250)||(20398900-20398973)
chr8 (17-72)||(20399004-20399059)
[»] chr5 (4 HSPs)
chr5 (17-252)||(21364833-21365068)
chr5 (187-255)||(29501021-29501088)
chr5 (179-254)||(20494853-20494928)
chr5 (18-83)||(20492163-20492228)
[»] chr1 (5 HSPs)
chr1 (17-254)||(14646611-14646848)
chr1 (95-255)||(14268017-14268177)
chr1 (17-188)||(10765165-10765336)
chr1 (183-254)||(10759163-10759234)
chr1 (17-75)||(14268177-14268235)
[»] chr3 (1 HSPs)
chr3 (17-248)||(12484208-12484438)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 45485206 - 45484970
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 116  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485206 caacatatgcaacccgcttccaaggtcctctatctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 45485107  T
Q  117 gctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgtctgacactgcttggtttgacagattacc 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485106 gctttcaaggacacggatctcattcctttccgtc-ttggaaccgttggctggctccctccgacatgacttgtctgacactgcttggtttgacagattacc 45485008  T
Q  217 tcctctgttggctttcgacttctctagggatagaaatg 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45485007 tcctctgttggctttcgacttctctagggatagaaatg 45484970  T

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Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 65 - 254
Target Start/End: Original strand, 7115644 - 7115833
Alignment:
Q  65 gattatttactagaatatctgggtggaaagtgattcatttgcgtctgttcttgctttcaaggacacggatctcattcctttccgtctttggaaccgttgg 164  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  7115644 gattatttactggaatatctgggtggaaagtgattcatttgcggctgttcttgctttcaagcacacagatctcattcctttccgtcttcggaaccgttgg 7115743  T
Q  165 ctggctccctccgacatgacttgtctgacactgcttggtttgacagattacctcctctgttggctttcgacttctctagggatagaaatg 254  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  7115744 ctggctccctcggacatgacttgtttgacactgcttggtttgacatattacctcctccgttgactttcgacttctctagggatagaaatg 7115833  T

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Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 22717040 - 22717277
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 116  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  22717040 caacatatgcaacccgctctcagggtcctctacttaattccaaatgaagattatttactggaatatctgggtggaaagtgattcatttgcggctgttctt 22717139  T
Q  117 gctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgtctgacactgcttggtttgacagattacc 216  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  22717140 gctttcaaggacacgaatctcattcctttccgtcttcggaaccgttggctggctccctcggacatgacttgtcagacactgctttgtttgacagattacc 22717239  T
Q  217 tcctctgttggctttcgacttctctagggatagaaatg 254  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  22717240 tcctttgttggctttcgacttctctagggatataaatg 22717277  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 20398973 - 20398900
Alignment:
Q  177 gacatgacttgtctgacactgcttggtttgacagattacctcctctgttggctttcgacttctctagggataga 250  Q
    |||||||||||||| ||| || |||||||||||||||||||||| || |||||||||| ||||||| |||||||    
T  20398973 gacatgacttgtctaacattgtttggtttgacagattacctcctttgctggctttcgatttctctatggataga 20398900  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 20399059 - 20399004
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattattt 72  Q
    ||||||||||||||||||  || |||||||| ||||||||||||||||||||||||    
T  20399059 caacatatgcaacccgctgacagggtcctctccctaattccaaatgaagattattt 20399004  T

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Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 21364833 - 21365068
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 116  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||  |||||||    
T  21364833 caacatatgcaacccgctcccagggtcctctacctaattccaaataaagattatttactggaatatctgggtggaaagtgattcatctgcggttgttctt 21364932  T
Q  117 gctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgtctgacactgcttggtttgacagattacc 216  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  21364933 gctttcaaggacacagatctcattcctttccgtcttcggaatcgttggctggcttcctcggacatgacttgtctgacactgcttggtttgacagattacc 21365032  T
Q  217 tcctctgttggctttcgacttctctagggatagaaa 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  21365033 tcctctgttggctttcgacttctctagggatagaaa 21365068  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 29501021 - 29501088
Alignment:
Q  187 gtctgacactgcttggtttgacagattacctcctctgttggctttcgacttctctagggatagaaatga 255  Q
    |||||||||| || ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  29501021 gtctgacactcct-ggtttgataaattacctcctctgttggctttcgacttctctagagatagaaatga 29501088  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 20494853 - 20494928
Alignment:
Q  179 catgacttgtctgacactgcttggtttgacagattacctcctctgttggctttcgacttctctagggatagaaatg 254  Q
    ||||||||||||| ||| | |||||||||||||||||| ||   |||| |||| || |||||||||||||||||||    
T  20494853 catgacttgtctggcacggtttggtttgacagattaccgccatcgttgtcttttgatttctctagggatagaaatg 20494928  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 20492163 - 20492228
Alignment:
Q  18 aacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatc 83  Q
    ||||||| ||||||||||||| |||||||| ||| ||||  | ||||||| ||||||| |||||||    
T  20492163 aacatattcaacccgctctcagggtcctctccctgattctcagtgaagataatttactggaatatc 20492228  T

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Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 14646611 - 14646848
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 116  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||| ||||||||    
T  14646611 caacatatgcaacccgctctcagggtcctttacctaattccaaatgaagattattgactggaatatttgggtggaaagtgattcatctgcggctgttctt 14646710  T
Q  117 gctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgtctgacactgcttggtttgacagattacc 216  Q
    |||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  14646711 gctttcaaggacacagatctcatacctttccatcttcggaaccgttggctggctccctcggacatgacttgtctgacattgcttgggttgacagattacc 14646810  T
Q  217 tcctctgttggctttcgacttctctagggatagaaatg 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14646811 tcctctgttggctttcgacttctctagggatagaaatg 14646848  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 14268177 - 14268017
Alignment:
Q  95 tgattcatttgcgtctgttcttgctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgtctgaca 194  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  14268177 tgattcgtttgcggttgttcttgctttcaaggacacggatctcattcctttccgtctttagaaccgttggctggctccctcggacatgacttgtctgaca 14268078  T
Q  195 ctgcttggtttgacagattacctcctctgttggctttcgacttctctagggatagaaatga 255  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14268077 ccgcttggtttgacagattacctcctctgttggctttcgacttctctagggatagaaatga 14268017  T

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Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 10765336 - 10765165
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 116  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  10765336 caacatatgcaacccgctcccagggtcctcaacctaattccaaatgaagattatttactggaatatctgggtggaaagtgattcatctgcgcctgttctt 10765237  T
Q  117 gctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgt 188  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||| || |||| ||||||||||||    
T  10765236 gctttcaaggacacaaatctcattcctttccgtcttcggaaccgttggctgacttcctcggacatgacttgt 10765165  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 10759234 - 10759163
Alignment:
Q  183 acttgtctgacactgcttggtttgacagattacctcctctgttggctttcgacttctctagggatagaaatg 254  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  10759234 acttgtttgacactgcttggtttgacaaattacctcctatgttggctttcgacttctctaaggatagaaatg 10759163  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 14268235 - 14268177
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttact 75  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||| ||||||||||    
T  14268235 caacatatgcaacccgctctcggggttctctacctaattccaaatgaaaattatttact 14268177  T

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Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 12484208 - 12484438
Alignment:
Q  17 caacatatgcaacccgctctcaaggtcctctacctaattccaaatgaagattatttactagaatatctgggtggaaagtgattcatttgcgtctgttctt 116  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  12484208 caacatatgcaacccgctcccagggtcctctacctaattccaaatgaagattatttactggaatatctgggtggaaagtgattcatctgcggctgttctt 12484307  T
Q  117 gctttcaaggacacggatctcattcctttccgtctttggaaccgttggctggctccctccgacatgacttgtctgacactgcttggtttgacagattacc 216  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||  |||||| || ||||||||||||||||||    
T  12484308 gctttcaaggacacggatctcattcctttccgtcttcggaaccgttggctggcttcctcggaaatgactttcctgacaatgattggtttgacagattacc 12484407  T
Q  217 tcctctgttggctttcgacttctctagggata 248  Q
    ||||||||||||||| ||| ||||||||||||    
T  12484408 tcctctgttggcttttgac-tctctagggata 12484438  T

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