View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_19 (Length: 250)
Name: NF9733_low_19
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48183500 - 48183256
Alignment:
| Q |
1 |
aaccatacccatcaatctcttcaagcatctttttctcaacttctggatgtgcagcaaccaaatatacaacagaagacaatgtaaaggaagtggttgctga |
100 |
Q |
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| T |
48183500 |
aaccatacccatcaatctcttcaagcatctttttctcaacttctggatgtgcagcaaccaaatatacaacagaagacaatgtaaaggaagtggttgctga |
48183401 |
T |
|
| Q |
101 |
tccagcaagcaagtgctcataagtaacagcactgatatattcaggtgtgaaaacattttccgaaacagcttttgattctctagcatttagtataagcgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48183400 |
tccagcaagcaagtgctcataagtaacagcactgatatattcaggtgtgaaaacattttccgaaacagcttttgattctctagcatttaggataagcgac |
48183301 |
T |
|
| Q |
201 |
aaaaaatcctttgaactacgtgttctatctttcgttcttctctct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48183300 |
aaaaaatcctttgaactacgtgttctatctttcgttcttttctct |
48183256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 4090194 - 4090318
Alignment:
| Q |
9 |
ccatcaatctcttcaagcatctttttctcaacttctggatgtgcagcaaccaaatatacaacagaagacaatgtaaaggaagtggttgctgatccagcaa |
108 |
Q |
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||||||||||||| ||||| |||| |||||| | |||||| ||||||||||||| |||| ||| ||||||||||| || ||||| || || || |||| |
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| T |
4090194 |
ccatcaatctcttgaagcaatttttcctcaacatttggatgaccagcaaccaaataaacaatagatgacaatgtaaaagatgtggtagccgagccggcaa |
4090293 |
T |
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| Q |
109 |
gcaagtgctcataagtaacagcact |
133 |
Q |
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| T |
4090294 |
gtaagtgttcataagtaacggcact |
4090318 |
T |
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