View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9733_low_2 (Length: 617)

Name: NF9733_low_2
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9733_low_2
NF9733_low_2
[»] chr4 (7 HSPs)
chr4 (99-600)||(41205878-41206397)
chr4 (1-41)||(3130496-3130536)
chr4 (1-41)||(5817698-5817738)
chr4 (49-96)||(41205810-41205860)
chr4 (1-41)||(47540508-47540548)
chr4 (5-41)||(23279194-23279230)
chr4 (1-41)||(8655590-8655630)
[»] chr8 (1 HSPs)
chr8 (1-41)||(19385227-19385267)
[»] chr7 (1 HSPs)
chr7 (1-41)||(9546320-9546360)
[»] chr5 (1 HSPs)
chr5 (1-41)||(10487423-10487463)
[»] chr3 (3 HSPs)
chr3 (1-41)||(49732450-49732490)
chr3 (1-41)||(32004563-32004603)
chr3 (5-41)||(13448066-13448102)
[»] chr1 (7 HSPs)
chr1 (1-41)||(4644596-4644636)
chr1 (1-41)||(14366141-14366181)
chr1 (1-41)||(21527744-21527784)
chr1 (1-41)||(52336245-52336285)
chr1 (3-41)||(47115873-47115911)
chr1 (1-41)||(9528270-9528310)
chr1 (5-41)||(48266235-48266271)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-41)||(22730-22770)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-41)||(135153-135193)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-41)||(312980-313020)
scaffold0002 (1-41)||(328434-328474)
[»] chr6 (2 HSPs)
chr6 (1-41)||(33629681-33629721)
chr6 (3-41)||(1682625-1682663)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 99 - 600
Target Start/End: Original strand, 41205878 - 41206397
Alignment:
Q  99 aaacaaccactaatcatggatgaagggcatgaggagacgtaacacattggtgatgaggggcatgttcataatgatgtaaatgatagtatccttgtgaaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  41205878 aaacaaccactaatcatggatgaagggcatgaggagacgtaacacattggtgatgaggggcatgttcataatgatgtaaatga--gtagccttgtgaaga 41205975  T
Q  199 ggatgcacataacgatg---gtgatgaggatgaggcagaaccatgagtctgaaacatctgatgtggtaaaacaaaatagtgaaacaacaaattgtaccaa 295  Q
    |||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41205976 ggatgcacataacgatgatggtgatgaggatgag-cagaaccatgagtctgaaacatctgatgtggtaaaacaaaatagtgaaacaacaaattgtaccaa 41206074  T
Q  296 aatggaggaatacgtgcctgtttctcacaagctgaacacgaacgaggaaagcaaatcacgtgaaagcatttcagagacac---------------atttc 380  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |  ||||| |||||| |||||||||||||               |||||    
T  41206075 aatggaggaatgcgtgcctgtttctcacaagctgaacacgaacgaggaaaacgtatcacatgaaagtatttcagagacacatgttgaggaacaagatttc 41206174  T
Q  381 aactctcaacctgttgaggagcaagttgctaactctcaacctattctaagcagagtggcgcaggaagatcttgaggttgtatagaaaatgttggaagcta 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41206175 aactctcaacctgttgaggagcaagttgctaactctcaacctattctaagcagagtggcacaggaagatcttgaggttgtatagaaaatgttggaagcta 41206274  T
Q  481 agtctgcatgtaatgtggat---atacataatctaatgcgtccaaatgaagttatttcctcctttgtaacatcaagggtataagcaacccagattcacga 577  Q
    ||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41206275 agtctgcatgtaatgtggataggatacataatctaatgcttccaaatgaagttatttcctcctttgtaacatcaagggtataagcaaccctgattcacga 41206374  T
Q  578 attgccttgagaaacttgtgtgt 600  Q
    |||||||||||||||||||||||    
T  41206375 attgccttgagaaacttgtgtgt 41206397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3130536 - 3130496
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3130536 tcagcctatacccaaacacacaagagggcaagaccaccact 3130496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5817738 - 5817698
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  5817738 tcagcctatacccaaacacataagagggcaagaccaccact 5817698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 41205810 - 41205860
Alignment:
Q  49 tttttacaattgaaggtggacaatggca---agaagcccgctgttgtccct 96  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  41205810 tttttacaattgaaggtggacaatggcaattagaagcccgctgttgtccct 41205860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47540508 - 47540548
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  47540508 tcagcctatacccaaacacacaagagggcatgaccaccact 47540548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 23279194 - 23279230
Alignment:
Q  5 cctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||| ||||||||||||||||||||||    
T  23279194 cctatacccaaacaaacaagagggcaagaccaccact 23279230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8655630 - 8655590
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  8655630 tcagcctatacccaaacacatgagagggtaagaccaccact 8655590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19385267 - 19385227
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  19385267 tcagcctatacccaaacacacaagagggcatgaccaccact 19385227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9546320 - 9546360
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  9546320 tcagcctatacccaaacacataagagggcaagaccaccact 9546360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10487463 - 10487423
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10487463 tcagcctatacccaaacacataagagggcaagaccaccact 10487423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49732490 - 49732450
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  49732490 tcagcctatacccaaacacacaagagggcatgaccaccact 49732450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32004563 - 32004603
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  32004563 tcagcctatacccaaacatacaagagggcatgaccaccact 32004603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 13448066 - 13448102
Alignment:
Q  5 cctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  13448066 cctatactcaaacacacaagagagcaagaccaccact 13448102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4644596 - 4644636
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  4644596 tcagcctatacccaaacacacaagagggcacgaccaccact 4644636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14366181 - 14366141
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  14366181 tcagcctatacccaaacacacaagagggcatgaccaccact 14366141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21527744 - 21527784
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  21527744 tcagcctatacccaaacacataagagggcaagaccaccact 21527784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52336245 - 52336285
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  52336245 tcagcctatacccaaacacacaagagggcatgaccaccact 52336285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 47115873 - 47115911
Alignment:
Q  3 agcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  47115873 agcctatacccaaacacacaagagggcatgaccaccact 47115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9528310 - 9528270
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  9528310 tcagcctatacccaaacacataagaggacaagaccaccact 9528270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 48266271 - 48266235
Alignment:
Q  5 cctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||||||||||| | ||||||||||    
T  48266271 cctatacccaaacacacaagagggtatgaccaccact 48266235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22770 - 22730
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  22770 tcagcctatacccaaatacataagagggcaagaccaccact 22730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 135193 - 135153
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  135193 tcagcctatacccaaacacatgagagggcaagaccaccact 135153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 313020 - 312980
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  313020 tcagcctatacccaaacacatgagagggcaagaccaccact 312980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 328474 - 328434
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  328474 tcagcctatacccaaacacatgagagggcaagaccaccact 328434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33629681 - 33629721
Alignment:
Q  1 tcagcctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  33629681 tcagcctatactcaaacacacaagagggcatgaccaccact 33629721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 1682625 - 1682663
Alignment:
Q  3 agcctatacccaaacacacaagagggcaagaccaccact 41  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  1682625 agcctatacccaaacacacaagaggacatgaccaccact 1682663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University