View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_20 (Length: 242)
Name: NF9733_low_20
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_20 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 13458635 - 13458411
Alignment:
| Q |
18 |
aatggatgcataattaaaggaaaaagtgattctaccaaccactcaacagaagcttaaaactgaaagcaaacaataatnnnnnnnntgctaggtacagttt |
117 |
Q |
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| T |
13458635 |
aatggatgcataattaaaggaaaaagtgattctaccaaccactcaacagaagcttaaaactgaaagcaaacaataataaaaaaaatgctaggtacagttt |
13458536 |
T |
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| Q |
118 |
tagactaaccttcaaatttatttatgggcaagttgagtattttatgttgtgtttagatatccnnnnnnnnnnnntagtaattaaactatgcagaaaggga |
217 |
Q |
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| T |
13458535 |
tagactaaccttcaaatttatttatgggcaagttgagtattttatgttgtgtttagatatcctaaaaaaaaaaatagtaattaaactatgcagaaaggga |
13458436 |
T |
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| Q |
218 |
ataataataataaaattaagaatat |
242 |
Q |
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| T |
13458435 |
ataataataataaaattaagaatat |
13458411 |
T |
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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 6321 - 6374
Alignment:
| Q |
119 |
agactaaccttcaaatttatttatgggcaagttgagtattttatgttgtgttta |
172 |
Q |
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||||| ||||||||||||| |||||||| |||| |||||||| || |||||||| |
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| T |
6321 |
agactgaccttcaaatttaattatgggcgagtttagtattttctgctgtgttta |
6374 |
T |
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