View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_22 (Length: 202)
Name: NF9733_low_22
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 1603873 - 1604045
Alignment:
| Q |
14 |
aggaaaacaaggtgaaaaatgacaaagaggtaagtaacacacttaaagtggtgtatttaattttatgttgtagtatgtcatattttgtattcaatttaat |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1603873 |
aggaaaacaaggagaaaaatgacaaagaggtaagtaacacactcaaagtggtgtatttaattttatgttgtagtatgtcatatttagtattcaatttaat |
1603972 |
T |
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| Q |
114 |
cacagtttttgtgtgtggcagagggttgatagtaattacaagcgtaattacaaagattactttgagttcatag |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603973 |
cacagtttttgtgtgtggcagagggttgatagtaattacaagcgtaattacaaagattactttgagttcatag |
1604045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 1604389 - 1604352
Alignment:
| Q |
149 |
ttacaagcgtaattacaaagattactttgagttcatag |
186 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| |
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| T |
1604389 |
ttactagcgtaattacaaggattactttgagttcatag |
1604352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 48007265 - 48007434
Alignment:
| Q |
14 |
aggaaaacaaggtgaaaaatgacaaagaggtaagtaacacacttaaagtggtgtatttaattttatgttgtagtatgtcat-attttgtattcaatttaa |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||| | || |||| | ||||||||||||||||||||||||||||| |||| ||||| ||||||| |
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| T |
48007265 |
aggaaaacaaggagaaaaatgacaaagaggtaagtaatgctctaaaagcagggtatttaattttatgttgtagtatgtcattatttagtattgaatttaa |
48007364 |
T |
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| Q |
113 |
tcacagtttttgtgtgtggcagagggttgatagtaattacaagcgtaattacaaagattactttgagttc |
182 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
48007365 |
tcacagtctttgtgtgtggcagagggttgatagttattacaagcgtaattacaaggattactttgagttc |
48007434 |
T |
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