View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9733_low_3 (Length: 543)
Name: NF9733_low_3
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_3 |
 | |
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| [»] scaffold0710 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 527
Target Start/End: Original strand, 51804036 - 51804558
Alignment:
| Q |
9 |
gagaagcagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgcctt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
51804036 |
gagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaatgaaaaggtggcctt |
51804135 |
T |
|
| Q |
109 |
ctgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcgtgaacta----aataaatacataaacaa |
204 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
51804136 |
ctgcagtgagagaacaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcgtgaactatataaataaatacataaatat |
51804235 |
T |
|
| Q |
205 |
aaatcttcttatatctcagtttccctaatccaagatttgttatgtacaggttgtcattccactgaagaagatcaagtgtgtgaggcaaagtcaaaatgtt |
304 |
Q |
| |
|
|| ||||| ||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
51804236 |
aactcttcatatatctcagttttcctaacccaagatttgttatgttcaggttgccattccactgaagaagatcaagtgtgtgaggcagagtcaaaatgtt |
51804335 |
T |
|
| Q |
305 |
gagaagccaacacaaaagtacataaacataatcacggtggacaattttgatttctggcttatgggtgtcgtaaaatatcagaaaactttgaaatatatcg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
51804336 |
gagaagccaacacaaaagtacataaacatagtcacaatggacaattttgatttctggcttatgggtgtcctaaaatatcagaaaactttcaaatatatcg |
51804435 |
T |
|
| Q |
405 |
agcaggcaatttctcaagcaagcttagatgaatataacaagtccactattagagcataacataaagaatttaagatataacttacaagagatgacataca |
504 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
51804436 |
agcaggcaatttctcaagcatgcttagatgaatagaacaagtccactcttagagcataacataaagaatttaagatataacttactagagatgacataca |
51804535 |
T |
|
| Q |
505 |
acaagcaatggaatgacagatgt |
527 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
51804536 |
acaagcaatgatatgacagatgt |
51804558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 51807990 - 51808472
Alignment:
| Q |
10 |
agaagcagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttc |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51807990 |
agaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttc |
51808089 |
T |
|
| Q |
110 |
tgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcgtgaactaaataaatacataaacaaaaatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||| || |
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|
| T |
51808090 |
tgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcctgaactaaataagtacataaacaaaactc |
51808189 |
T |
|
| Q |
210 |
ttcttatatctcagtttccctaatccaagatttgttatgtacaggttgtcattccactgaagaagatcaagtgtgtgaggcaaagtcaaaatgttgagaa |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
51808190 |
ttcttacatctcagtttccctaatccaatatttgttatgtgcaggtggccattccactgaagaatatcaagtgtgtgaatcaaagtcaaaatgttgagaa |
51808289 |
T |
|
| Q |
310 |
gccaacacaaaagtacataaacataatcacggtggacaattttgatttctggcttatgggtgtcgtaaaatatcagaaaactttgaaatatatcgagcag |
409 |
Q |
| |
|
||||||||||||||||||||| ||| | || | ||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |
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|
| T |
51808290 |
gccaacacaaaagtacataaagatagttacagaagacggttttgatttctggcttatgggtgttctaaaatatcagaaaactttcaaatatctcgagcag |
51808389 |
T |
|
| Q |
410 |
gcaatttctcaagcaagcttagatgaatataacaagtccactattagagcataa-cataaagaatttaagatataacttacaa |
491 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||| |
|
|
| T |
51808390 |
gcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaatttaagatataacatacaa |
51808472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 422
Target Start/End: Original strand, 51780290 - 51780684
Alignment:
| Q |
29 |
aaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaataa |
128 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
51780290 |
aaagtttctcactgttatctttccaccacatctggccctctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataa |
51780389 |
T |
|
| Q |
129 |
aagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcgtgaactaaataaatacataaacaaaaatcttcttatatctcagtttcc |
228 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |
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|
| T |
51780390 |
aagtctataatcagaaaggtcaaatgtgtaggatccgctataaggtaagccgtgaactatataaatacataaagaaacctcttcatatatctcagtttcc |
51780489 |
T |
|
| Q |
229 |
ctaatccaaga-tttgttatgtacaggttgtcattccactgaagaagatcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacacaaaagtacat |
327 |
Q |
| |
|
|| || | ||| ||| ||||||| |||| | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
51780490 |
ctcattcgagatttttttatgtataggtcgcaattccgctgaagaaggtcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacat |
51780589 |
T |
|
| Q |
328 |
aaacataatcacggtggacaattttgatttctggcttatgggtgtcgtaaaatatcagaaaactttgaaatatatcgagcaggcaatttctcaag |
422 |
Q |
| |
|
||| ||| | || ||||| || || ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
51780590 |
aaatatagttacagtggataacttcgatttctggcttatgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaatttcacaag |
51780684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 51772438 - 51772584
Alignment:
| Q |
33 |
tttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaataaaagt |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
51772438 |
tttcgcagtgttatctatccaccacatctggccctctagccggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagt |
51772537 |
T |
|
| Q |
133 |
cttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
179 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772538 |
ctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
51772584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 246 - 450
Target Start/End: Original strand, 51772672 - 51772872
Alignment:
| Q |
246 |
atgtacaggttgtcattccactgaagaagatcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacacaaaagtacataaacataatcacggtgga |
345 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
51772672 |
atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaacatcgtcacagtgga |
51772771 |
T |
|
| Q |
346 |
caattttgatttctggcttatgggtgtcgtaaaatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaagcttagatgaatataacaag |
445 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || ||||| ||||| || || ||| ||||| | ||||||||| ||||||||||||||||| | ||| |
|
|
| T |
51772772 |
caattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttct----caagcttagatgaatatcaaaag |
51772867 |
T |
|
| Q |
446 |
tccac |
450 |
Q |
| |
|
||||| |
|
|
| T |
51772868 |
tccac |
51772872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 51768088 - 51768137
Alignment:
| Q |
290 |
caaagtcaaaatgttgagaagccaacacaaaagtacataaacataatcac |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
51768088 |
caaagtcaaaatgttgagaagccaacacaaaaggacataattataatcac |
51768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 51761489 - 51761538
Alignment:
| Q |
88 |
ctccaatgaaaaggttgccttctgcagtgagagatcaataaaagtcttca |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
51761489 |
ctccactgaaaaggttgccttctgcagtgagagatccatgaaactcttca |
51761538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 422
Target Start/End: Original strand, 51768145 - 51768201
Alignment:
| Q |
366 |
tgggtgtcgtaaaatatcagaaaactttgaaatatatcgagcaggcaatttctcaag |
422 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
51768145 |
tgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaag |
51768201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 12196246 - 12196136
Alignment:
| Q |
16 |
agagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagt |
115 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||| || ||||||||||||||||| || || |||||||| || | | | || ||||||| || ||| |
|
|
| T |
12196246 |
agagaggctactaaaagcatctcaatgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtagt |
12196147 |
T |
|
| Q |
116 |
gagagatcaat |
126 |
Q |
| |
|
||||||||||| |
|
|
| T |
12196146 |
gagagatcaat |
12196136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 29 - 426
Target Start/End: Original strand, 6932 - 7332
Alignment:
| Q |
29 |
aaagtttcgcagtgttatctatccaccacatctggtcct--ctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaat |
126 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
6932 |
aaagtttctcactgttatctttccaccacatctggcccctcctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaat |
7031 |
T |
|
| Q |
127 |
aaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcgtgaactaaataaatacataaacaaaaatcttcttatatctcagttt |
226 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
7032 |
aaaagtctataatcagaaaggtcaaatgtgtaggatccgctataaggtaagccgtgaactatataaatacataaagaaacctcttcatatatctcagttt |
7131 |
T |
|
| Q |
227 |
ccctaatccaaga-tttgttatgtacaggttgtcattccactgaagaagatcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacacaaaagtac |
325 |
Q |
| |
|
|||| || | ||| ||| ||||||| |||| | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
7132 |
ccctcattcgagatttttttatgtataggtcgcaattccgctgaagaaggtcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtac |
7231 |
T |
|
| Q |
326 |
ataaacataatcacggtggacaattttgatttctggcttatgggtgtcgtaaaatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaa |
425 |
Q |
| |
|
||||| ||| | || ||||| || || ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
|
|
| T |
7232 |
ataaatatagttacagtggataacttcgatttctggcttatgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaa |
7331 |
T |
|
| Q |
426 |
g |
426 |
Q |
| |
|
| |
|
|
| T |
7332 |
g |
7332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 32908291 - 32908232
Alignment:
| Q |
246 |
atgtacaggttgtcattccactgaagaagatcaagtgtgtgaggcaaagtcaaaatgttg |
305 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32908291 |
atgtacatgttgtcattacacttaagaagatcaagtgtgtgaatcaaagtcaaaatgttg |
32908232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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