View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9733_low_5 (Length: 483)

Name: NF9733_low_5
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9733_low_5
NF9733_low_5
[»] chr3 (3 HSPs)
chr3 (14-447)||(45525587-45526017)
chr3 (74-169)||(44657400-44657495)
chr3 (14-47)||(44657521-44657554)
[»] chr4 (2 HSPs)
chr4 (74-188)||(49250549-49250663)
chr4 (131-176)||(38582173-38582218)
[»] chr8 (2 HSPs)
chr8 (126-180)||(9060289-9060343)
chr8 (151-196)||(42146062-42146108)
[»] chr5 (3 HSPs)
chr5 (151-196)||(11782217-11782263)
chr5 (151-196)||(27514259-27514305)
chr5 (151-188)||(1463788-1463825)
[»] chr2 (2 HSPs)
chr2 (151-196)||(14360106-14360152)
chr2 (151-187)||(42481211-42481247)
[»] chr7 (1 HSPs)
chr7 (123-188)||(5355222-5355287)
[»] chr6 (1 HSPs)
chr6 (151-188)||(18058406-18058443)
[»] chr1 (3 HSPs)
chr1 (151-188)||(5056042-5056079)
chr1 (151-188)||(14998517-14998554)
chr1 (151-188)||(47215506-47215543)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Complemental strand, 45526017 - 45525587
Alignment:
Q  14 agagaaaaaattagaaagattgtagttgtactacgtagtagaannnnnnnnnnnnntaatgtacaatgaacgagatagagttggggttagatttggtatg 113  Q
    ||||||||||||||||||||||||||||||||||||||| |||             ||| ||||||||| ||||||||||||||||||||||||||||||    
T  45526017 agagaaaaaattagaaagattgtagttgtactacgtagttgaaagagagaagaga-taaggtacaatgagcgagatagagttggggttagatttggtatg 45525919  T
Q  114 ggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttc-ttttatacnnnnnnnccttaatca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||||||    
T  45525918 ggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttcattttatacaaaa---ccttaatca 45525822  T
Q  213 catgtgtgaagttattaagacaagtgtctcaaataaatgcaacgtgcttacccgcatctttactttaattatctaatgttaggtcatgaggatgttgagt 312  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  45525821 catgtgtgaagttattaaaacaagtgtctcaaataaatgcaacgtgcttacatgcatctttactttaattatctaatgttaggtcatgaggatgttgagt 45525722  T
Q  313 ttgtacatgatattcatgcatgtttaatcgagttgatgatattgagcaatgagcatgtagataatattgatgataaagacaatcatatggtttaggatgt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45525721 ttgtacatgatattcatgcatgtttaatcgagttgatgatattgagcaatgagcatgtagataatattgatgataaagacaatcatatggtttaggatgt 45525622  T
Q  413 tgagctagcttaatatctcgtgtgactatggaaat 447  Q
    |||||||||||||||||||||||||||||||||||    
T  45525621 tgagctagcttaatatctcgtgtgactatggaaat 45525587  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 44657495 - 44657400
Alignment:
Q  74 gtacaatgaacgagatagagttggggttagatttggtatgggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatgga 169  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44657495 gtacaatgagagagatagagttggggttagatttggtatgggtggagaatgatagaaaatctaatcaaatggtggttaaaattggtccatgatgga 44657400  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 44657554 - 44657521
Alignment:
Q  14 agagaaaaaattagaaagattgtagttgtactac 47  Q
    |||||| |||||||||||||||||||||||||||    
T  44657554 agagaataaattagaaagattgtagttgtactac 44657521  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 49250663 - 49250549
Alignment:
Q  74 gtacaatgaacgagatagagttggggttagatttggtatgggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaa 173  Q
    |||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||   |||| |||    
T  49250663 gtacaatgagagagatagagttggggttagatttgggatgagtggagcatgatagaaaatctaatcaaatggtggttaaaattgatccaccgtggagcaa 49250564  T
Q  174 tatttttatgggttc 188  Q
    |||||||||||||||    
T  49250563 tatttttatgggttc 49250549  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 38582218 - 38582173
Alignment:
Q  131 aatctaatcaaatggtggttaaaattggtccatgatggaccaatat 176  Q
    ||||||||| ||||||||  ||||||||||||| ||||||||||||    
T  38582218 aatctaatctaatggtgggaaaaattggtccatcatggaccaatat 38582173  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 9060289 - 9060343
Alignment:
Q  126 tagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatattttt 180  Q
    |||||||||||||| || ||||   ||||||||||||||||| ||||||||||||    
T  9060289 tagaaaatctaatctaacggtgaagaaaattggtccatgatgaaccaatattttt 9060343  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 42146108 - 42146062
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc-ttttatac 196  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  42146108 aaaattggtccatcatggaccaatatttttataggttcattttatac 42146062  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 11782217 - 11782263
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc-ttttatac 196  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  11782217 aaaattggtccatcatggaccaatatttttataggttcattttatac 11782263  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 27514259 - 27514305
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc-ttttatac 196  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  27514259 aaaattggtccatcatggaccaatatttttataggttcattttatac 27514305  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 1463788 - 1463825
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc 188  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  1463788 aaaattggtccatcatggaccaatatttttataggttc 1463825  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 14360152 - 14360106
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc-ttttatac 196  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||    
T  14360152 aaaattggtctatgatggaccaatattttcatgggttcattttatac 14360106  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 42481247 - 42481211
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggtt 187  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  42481247 aaaattggtccatcatggaccaatatttttataggtt 42481211  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 5355287 - 5355222
Alignment:
Q  123 tgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttc 188  Q
    ||||||||||| |||||||| |||||  || |||||||||||||| | || |||||||| ||||||    
T  5355287 tgatagaaaatttaatcaaacggtggaaaagattggtccatgatgaatcagtatttttaagggttc 5355222  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 18058443 - 18058406
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc 188  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  18058443 aaaattggtccatcatggaccaatatttttataggttc 18058406  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 5056042 - 5056079
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc 188  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  5056042 aaaattggtccatcatggaccaatattttcatgggttc 5056079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 14998554 - 14998517
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc 188  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  14998554 aaaattggtccatcatggaccaatatttttataggttc 14998517  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 47215543 - 47215506
Alignment:
Q  151 aaaattggtccatgatggaccaatatttttatgggttc 188  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  47215543 aaaattggtccatcatggaccaatatttttataggttc 47215506  T

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