View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9733_low_6 (Length: 445)
Name: NF9733_low_6
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 24761611 - 24762034
Alignment:
| Q |
1 |
ttagtgatcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggannnnnnnncttaat |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24761611 |
ttagtggtcaagtgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggattttttttcttaat |
24761710 |
T |
|
| Q |
101 |
ctctctttgatccatccaagtaaaagtaaaatgattcgctttagccctttctaactaaccttaataaaccgttttgattcacatacattgagaatataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24761711 |
ctctctttgatccatccaagtaaaagtaaaatgatctgctttagccctttctaactaaccttaataaaccgttttgattcacatacattgagaatataaa |
24761810 |
T |
|
| Q |
201 |
atatgacttatttaacacaatttcataagttgttgatttcagaacatagatggagcttgaggaagatcgattatcaagcctgcctccaatgaatgaggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24761811 |
atatgacttatttaacacaatttcataagttgttgatttcagaacatagatggagcttgaggaagatcgattatcaagcctgcctccaatgaatgaggtg |
24761910 |
T |
|
| Q |
301 |
attgcagagcttttggattctttcacgcttcatgatagcatttcggcgatgattcagattcgaaagttgaggtaacacttagatctaatcctcatatcgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24761911 |
attgcagagcttttggattctttcacgcttcatgatagcatttcggcgaagattcagattcgaaagttgaggtaacacttagatctaatcctcatatcgt |
24762010 |
T |
|
| Q |
401 |
atcagatcattcttgagagcagct |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24762011 |
atcagatcattcttgagagcagct |
24762034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 24761242 - 24761516
Alignment:
| Q |
1 |
ttagtgatcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggannnnnnnncttaat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24761242 |
ttagtggtcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggattttttttcttaat |
24761341 |
T |
|
| Q |
101 |
ctctctttgatccatccaagtaaaagtaaaatgattcgctttagccctttctaactaaccttaataaaccgttttgattcacatacattgagaatataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24761342 |
ctctctttgatccatccaagtaaaagtaaaatgattcactttagccctttctaactaaccttaataaaccgttttgattcaaatacattgagaatataaa |
24761441 |
T |
|
| Q |
201 |
atatgacttatttaacacaatttcataagttgttgatttcagaacatagatggagcttgaggaagatcgattatc |
275 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24761442 |
atatgacttatttaacacaattacataagttgttgatttcagaacatagatggagcttgaggaagatcgattatc |
24761516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 52129046 - 52129469
Alignment:
| Q |
1 |
ttagtgatcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggannnnnnnncttaat |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52129046 |
ttagtggtcaagtgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggattttttttcttaat |
52129145 |
T |
|
| Q |
101 |
ctctctttgatccatccaagtaaaagtaaaatgattcgctttagccctttctaactaaccttaataaaccgttttgattcacatacattgagaatataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52129146 |
ctctctttgatccatccaagtaaaagtaaaatgatctgctttagccctttctaactaaccttaataaaccgttttgattcacatacattgagaatataaa |
52129245 |
T |
|
| Q |
201 |
atatgacttatttaacacaatttcataagttgttgatttcagaacatagatggagcttgaggaagatcgattatcaagcctgcctccaatgaatgaggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52129246 |
atatgacttatttaacacaatttcataagttgttgatttcagaacatagatggagcttgaggaagatcgattatcaagcctgcctccaatgaatgaggtg |
52129345 |
T |
|
| Q |
301 |
attgcagagcttttggattctttcacgcttcatgatagcatttcggcgatgattcagattcgaaagttgaggtaacacttagatctaatcctcatatcgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52129346 |
attgcagagcttttggattctttcacgcttcatgatagcatttcggcgaagattcagattcgaaagttgaggtaacacttagatctaatcctcatatcgt |
52129445 |
T |
|
| Q |
401 |
atcagatcattcttgagagcagct |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
52129446 |
atcagatcattcttgagagcagct |
52129469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 52128677 - 52128951
Alignment:
| Q |
1 |
ttagtgatcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggannnnnnnncttaat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52128677 |
ttagtggtcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagtctaatggattttttttcttaat |
52128776 |
T |
|
| Q |
101 |
ctctctttgatccatccaagtaaaagtaaaatgattcgctttagccctttctaactaaccttaataaaccgttttgattcacatacattgagaatataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52128777 |
ctctctttgatccatccaagtaaaagtaaaatgattcactttagccctttctaactaaccttaataaaccgttttgattcaaatacattgagaatataaa |
52128876 |
T |
|
| Q |
201 |
atatgacttatttaacacaatttcataagttgttgatttcagaacatagatggagcttgaggaagatcgattatc |
275 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128877 |
atatgacttatttaacacaattacataagttgttgatttcagaacatagatggagcttgaggaagatcgattatc |
52128951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 1196392 - 1196431
Alignment:
| Q |
229 |
gttgttgatttcagaacatagatggagcttgaggaagatc |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1196392 |
gttgttgatttcagaacataaatggagcttgaggaagatc |
1196431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 1180052 - 1180089
Alignment:
| Q |
231 |
tgttgatttcagaacatagatggagcttgaggaagatc |
268 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1180052 |
tgttgatttcagaacataaatggagcttgaggaagatc |
1180089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University