View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_7 (Length: 435)
Name: NF9733_low_7
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 14327357 - 14326947
Alignment:
| Q |
18 |
gaaggatcaaggattccaacaactttgatatgtccaccggctccgaggaaacgaaaagcttctttgaaatggaattatcgcggaaaagcaagagagtttt |
117 |
Q |
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| T |
14327357 |
gaaggatcaaggattccaacaactttgatatgtccaccggctccgaggaaacgaaaagcttctttgaaatggaattatcgcggaaaagcaagagagtttt |
14327258 |
T |
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| Q |
118 |
tcactccacctgagttagaaactgtgttcatacgccatgttgaaagggctatagctaattgatcatagagatggaaaaatataactatgtatctcaactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14327257 |
tcactccacctgagttagaaactgtgttcatacgccatgttgaaagggctatagctaattgatcatagagatggaaaaatataactatgtatctcaactt |
14327158 |
T |
|
| Q |
218 |
tagttagttaaatttttcttttgtatttcttagtgttaattagctagtcacgaagtatcgtaagtgcagagtggtcttgttttcacgatccactaagatt |
317 |
Q |
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| T |
14327157 |
tagttagttaaatttttcttttgtatttcttagtgttaattagctagtcacgaagtatcgtaagtgcagagtggtcttgttgtcacgatccgctaagatt |
14327058 |
T |
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| Q |
318 |
cagacacaactcgtccnnnnnnntagtgctagctagctagaatatttggttatgttatgtaactttttcttannnnnnnnagtgttttctatgttttagt |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14327057 |
cagacacaactcgtccaaaaaaatagtgctagctagctagaatatttggttatgttatgtaactttttcttattttttttagtgttttctatgttttagt |
14326958 |
T |
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| Q |
418 |
tgtttcctttg |
428 |
Q |
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| T |
14326957 |
tgtttcctttg |
14326947 |
T |
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