View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_8 (Length: 434)
Name: NF9733_low_8
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 4627005 - 4626582
Alignment:
| Q |
11 |
tgtttaaatcactttatgtatgtctttaatttgtataatcaaacttcaaactcacaattggcctaatttttgtattgtttaatttttattagatgccctc |
110 |
Q |
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| T |
4627005 |
tgtttaaatcactttatgtatgtctttaatttgtataatcaaacttcaaactcacaattggcctaatttttgtattgtttaatttttattagatgccctc |
4626906 |
T |
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| Q |
111 |
tggttcatctagtcaatttggagtgcctccacatgaaggtgacaggcagatggtggtattttctggacctcagctttcgaacatgatggtttctactgat |
210 |
Q |
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| T |
4626905 |
tggttcatctagtcaatttggagtgcctccacatgaaggtgacaggcagatggtggtattttctggacctcagctttcgaacatgatggtttctactgat |
4626806 |
T |
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| Q |
211 |
gtgtatgctaatgatattactgttgttcctcgttctgggtaagttgccaggcctatgtaagttgaaaggcagccttttgttttccatgttttcacatttc |
310 |
Q |
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| T |
4626805 |
gtgtatgctaatgatattactgttgttcctcgttctgggtaagttgccaggcctatgtaagttgaaaggcagccttttgttttccatgttttcacatttc |
4626706 |
T |
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| Q |
311 |
tgcgttgttttttatatttcccattggtatgctaatgaggatagggttcttttgtgcagccatctttttctaactatttttactttgttattgtagttcc |
410 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4626705 |
tgcgttgttttttgtatttcccattggtatgctaatgaggatagggttcttttgtgcagccatctttttctaactatttttgctttgttattgtagttcc |
4626606 |
T |
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| Q |
411 |
agttatagcaatgtcgagaatgat |
434 |
Q |
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| T |
4626605 |
agttatagcaatgtcgagaatgat |
4626582 |
T |
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