View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9733_low_9 (Length: 411)
Name: NF9733_low_9
Description: NF9733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9733_low_9 |
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| [»] scaffold0262 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 13458400 - 13458013
Alignment:
| Q |
19 |
tatggatctttcacggcattgttctggactccatctagaggttgtgcgttcttcaacggtatagtttgtgaaacatagcagagactcatcactgtgaaca |
118 |
Q |
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| T |
13458400 |
tatggatctttcacggcattgttctggactccatctagagattgtgcgttcttcaacggtatagtttgtgaaacatagcagagactcatcactgtgaaca |
13458301 |
T |
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| Q |
119 |
tttttgttaatctacaaaactaataaggttttcacaacacttccaagaattcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggt |
218 |
Q |
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| T |
13458300 |
tttttgttaatctacaaaactaataaggttttcgcaacacttccaagaagtcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggt |
13458201 |
T |
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| Q |
219 |
gatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatagacaatcaagtctacaccatac---tgagc |
315 |
Q |
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| T |
13458200 |
aatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatggacaatcaagtctacaccatactgatgagc |
13458101 |
T |
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| Q |
316 |
tcctgacctaccagtttttcatccgaaggtgagaataggccttgtagaaacaagggaatgcatctttcttggacttgaagtaacacca |
403 |
Q |
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| T |
13458100 |
tcctgacctaccagtttttcatccgaaggtgagaataggccttgtagaaacaagggaatgcatctttcttagacttgaagtaacacca |
13458013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 36663123 - 36663507
Alignment:
| Q |
19 |
tatggatctttcacggcattgttctggactccatctagaggttgtgcgttcttcaacggtatagtttgtgaaacatagcagagactcatcactgtgaaca |
118 |
Q |
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| T |
36663123 |
tatggatctttcacggcattgttctggactccatcgggagattgtgcgttcttcaacggtatagtttgtcaaacataacagagactcatcattgttacca |
36663222 |
T |
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| Q |
119 |
tttttgttaatctacaaaactaataaggttttcacaacacttccaagaattcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggt |
218 |
Q |
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| T |
36663223 |
tttttgttaacgtacaaaactaataaggtttttgcaacacctccaagaagtcgagttgtgcaatgaacatcagaccatactctcaatcttccatttagat |
36663322 |
T |
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| Q |
219 |
gatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatagacaatcaagtctacaccatactgagctcc |
318 |
Q |
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| T |
36663323 |
caccatccttgtcatgagatagaacaagtacaccatactcagaatgcacccgagcaggatgatggcgatagacaatcaagtctacaccatactgagcccc |
36663422 |
T |
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| Q |
319 |
tgacct-----accagtttttcatccgaaggtgagaataggccttgtagaaacaagggaatgcatctttcttggacttgaagtaa |
398 |
Q |
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| T |
36663423 |
tgacctcacaacccaatttttcattctaagatgagaataagccttgtagaaataagggaatgtttctttcttggacctgaagtaa |
36663507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 6422 - 6811
Alignment:
| Q |
19 |
tatggatctttcacggcattgttctggactccatctagaggttgtgcgttcttcaacggtatagtttgtgaaacatagcagagactcatcactgtgaaca |
118 |
Q |
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||||||||||| ||| ||||| |||||||||||||| ||| ||||||||||||| | |||||| ||||| ||||||| |||||||| ||||| || | || |
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| T |
6422 |
tatggatctttaacgccattgctctggactccatctggagattgtgcgttcttcgatggtataatttgtcaaacataacagagacttatcacagtcacca |
6521 |
T |
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| Q |
119 |
tttttgttaatctacaaaactaataaggttttcacaacacttccaagaattcaagttgtgcaatgaacatcagaccatactctcaatctttcatttaggt |
218 |
Q |
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| T |
6522 |
tttttgttaacgtacaaaactagtaaggtttttgcaacacttccaagaagttgagttgtgcaaagaacatcagatcatactctcaatcttccatttaatt |
6621 |
T |
|
| Q |
219 |
gatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatagacaatcaagtctacaccatactgagctcc |
318 |
Q |
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| T |
6622 |
caccatcattgtcatgtgatagaacaagtacaccatactcagaatgcacccaagccggatgatggcgataaacaataaagtctacaccatactgagacct |
6721 |
T |
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| Q |
319 |
tgacct-----accagtttttcatccgaaggtgagaataggccttgtagaaacaagggaatgcatctttcttggacttgaagtaacacca |
403 |
Q |
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| T |
6722 |
tgacctcactacccagtttttcattcgaaggtgagaataagccttgtagaaataagggaatgtttctttcttggacttgaagcaacacca |
6811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 10097 - 10016
Alignment:
| Q |
83 |
tttgtgaaacatagcagagactcatcactgtgaacatttttgttaatctacaaaactaataaggttttcacaacacttccaa |
164 |
Q |
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||||| ||||||| |||||||| |||||||| | |||||||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
10097 |
tttgtcaaacataacagagacttatcactgtcaccatttttgttaacgtacaaaactagtaaggtttttgcaacacttccaa |
10016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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