View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9734_low_1 (Length: 856)

Name: NF9734_low_1
Description: NF9734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9734_low_1
NF9734_low_1
[»] chr5 (15 HSPs)
chr5 (17-385)||(24136981-24137358)
chr5 (293-571)||(24136746-24137012)
chr5 (344-472)||(24136986-24137114)
chr5 (642-733)||(24136584-24136675)
chr5 (376-507)||(24136889-24137021)
chr5 (109-201)||(9512024-9512116)
chr5 (345-413)||(9511777-9511845)
chr5 (324-389)||(11335370-11335437)
chr5 (324-410)||(9511811-9511899)
chr5 (204-292)||(11335335-11335423)
chr5 (136-197)||(11335330-11335391)
chr5 (136-191)||(9511926-9511981)
chr5 (417-481)||(11335371-11335437)
chr5 (675-732)||(11335661-11335716)
chr5 (416-507)||(24137044-24137136)
[»] chr8 (6 HSPs)
chr8 (286-571)||(20241903-20242183)
chr8 (315-571)||(20250913-20251164)
chr8 (315-507)||(20242054-20242247)
chr8 (293-415)||(20250983-20251105)
chr8 (136-201)||(20242326-20242391)
chr8 (136-201)||(20250769-20250834)
[»] chr7 (18 HSPs)
chr7 (286-571)||(44338226-44338506)
chr7 (315-507)||(44338377-44338570)
chr7 (286-507)||(15623046-15623269)
chr7 (416-571)||(46963798-46963953)
chr7 (259-448)||(15623104-15623303)
chr7 (17-201)||(46963416-46963600)
chr7 (337-507)||(15623006-15623176)
chr7 (104-201)||(21813955-21814053)
chr7 (259-358)||(15623197-15623306)
chr7 (345-408)||(21813824-21813887)
chr7 (340-415)||(46963815-46963889)
chr7 (340-416)||(11828573-11828649)
chr7 (132-188)||(46963681-46963737)
chr7 (136-201)||(44338649-44338714)
chr7 (345-389)||(11828609-11828653)
chr7 (348-388)||(24487088-24487128)
chr7 (325-413)||(21813850-21813940)
chr7 (147-189)||(24486942-24486984)
[»] chr1 (10 HSPs)
chr1 (17-408)||(15629705-15630107)
chr1 (325-500)||(15629931-15630107)
chr1 (350-416)||(19825091-19825157)
chr1 (416-483)||(15629930-15629997)
chr1 (345-389)||(19825117-19825161)
chr1 (21-84)||(9168081-9168144)
chr1 (136-253)||(3775072-3775188)
chr1 (136-199)||(12177164-12177227)
chr1 (342-416)||(2072366-2072440)
chr1 (342-416)||(2075896-2075970)
[»] chr6 (19 HSPs)
chr6 (259-571)||(21861990-21862311)
chr6 (296-540)||(13167359-13167604)
chr6 (293-507)||(21862142-21862363)
chr6 (17-249)||(9290994-9291228)
chr6 (286-403)||(28063583-28063699)
chr6 (314-472)||(28063518-28063677)
chr6 (377-507)||(21862239-21862371)
chr6 (132-201)||(22860908-22860976)
chr6 (642-732)||(21861793-21861884)
chr6 (136-201)||(22860941-22861007)
chr6 (105-157)||(28063456-28063508)
chr6 (169-254)||(22860917-22861008)
chr6 (642-730)||(10741328-10741417)
chr6 (132-201)||(22860797-22860869)
chr6 (342-382)||(10741529-10741569)
chr6 (345-412)||(13097903-13097970)
chr6 (642-728)||(13167182-13167269)
chr6 (136-201)||(22860762-22860829)
chr6 (352-389)||(13097895-13097932)
[»] chr4 (17 HSPs)
chr4 (340-571)||(16870588-16870820)
chr4 (17-169)||(16871262-16871410)
chr4 (132-415)||(16870652-16870955)
chr4 (376-446)||(54147835-54147905)
chr4 (642-732)||(16870242-16870332)
chr4 (293-377)||(54147811-54147896)
chr4 (325-409)||(54147717-54147802)
chr4 (376-500)||(54147718-54147843)
chr4 (325-381)||(54147869-54147926)
chr4 (105-157)||(54147912-54147964)
chr4 (346-413)||(42265426-42265492)
chr4 (140-201)||(24225681-24225742)
chr4 (416-472)||(54147870-54147927)
chr4 (136-201)||(16871105-16871172)
chr4 (132-201)||(16871033-16871105)
chr4 (345-389)||(24225502-24225546)
chr4 (117-201)||(24225647-24225735)
[»] chr2 (22 HSPs)
chr2 (240-481)||(1173283-1173535)
chr2 (17-201)||(8986502-8986686)
chr2 (424-571)||(8986150-8986298)
chr2 (325-507)||(1173283-1173467)
chr2 (119-232)||(32290742-32290863)
chr2 (17-146)||(9047993-9048116)
chr2 (60-195)||(1173133-1173268)
chr2 (17-71)||(32290862-32290916)
chr2 (136-201)||(38583967-38584033)
chr2 (461-571)||(38584195-38584301)
chr2 (341-415)||(8986214-8986287)
chr2 (132-225)||(38583998-38584102)
chr2 (132-188)||(8986368-8986424)
chr2 (136-232)||(38583934-38584035)
chr2 (345-389)||(38584202-38584246)
chr2 (353-415)||(1173560-1173622)
chr2 (136-201)||(32290709-32290775)
chr2 (325-416)||(38584083-38584176)
chr2 (346-416)||(38584168-38584242)
chr2 (345-389)||(38584136-38584180)
chr2 (458-512)||(1173573-1173627)
chr2 (345-415)||(1173583-1173653)
[»] chr3 (10 HSPs)
chr3 (17-162)||(50295902-50296041)
chr3 (16-181)||(46691794-46691955)
chr3 (340-512)||(46691968-46692141)
chr3 (286-416)||(46692006-46692137)
chr3 (325-438)||(42530711-42530824)
chr3 (416-508)||(42530733-42530825)
chr3 (60-201)||(42530947-42531090)
chr3 (646-732)||(50295292-50295379)
chr3 (132-332)||(42530725-42530947)
chr3 (353-389)||(50295550-50295586)
[»] scaffold0499 (1 HSPs)
scaffold0499 (352-389)||(7304-7341)
[»] scaffold0025 (1 HSPs)
scaffold0025 (361-391)||(154938-154968)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 24137358 - 24136981
Alignment:
Q  17 catcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatc 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24137358 catcaaccaatcaaatagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtatccaaagaatc 24137259  T
Q  117 atcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaaccaaaa 216  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24137258 atcaaaagtgggagaagtgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaaccaaaa 24137159  T
Q  217 gggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactca 308  Q
    |||||||||| |||||| |||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||        ||||||||||||||||    
T  24137158 gggggagaagtgcaatctattagaagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactca 24137059  T
Q  309 ccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 385  Q
    ||||||||||||||| |||||||| | |||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24137058 ccaaacaaccaaattgaagaatcaaagggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaattg 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 293 - 571
Target Start/End: Complemental strand, 24137012 - 24136746
Alignment:
Q  293 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg-aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 391  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24137012 gtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 24136913  T
Q  392 gtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattc 491  Q
    |||||||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24136912 gtcggctcaccaaacaaccaaattgaagaatcaaaag---------aagcaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgactc 24136822  T
Q  492 acccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 571  Q
    |||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  24136821 acccaacaagcaaattatgagtgctttacatac----caaacaaacgaacaaaccaattgtgagcactattttgactcac 24136746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 24137114 - 24136986
Alignment:
Q  344 aaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaa 443  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  24137114 aaaccaaattgtgagcactcaactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaagaatcaaagggggagaagaaaccaa 24137016  T
Q  444 attgtaagcac-acgctcaccaaacaacca 472  Q
    ||||| || || |  |||||||||||||||    
T  24137015 attgtgagaactagactcaccaaacaacca 24136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 642 - 733
Target Start/End: Complemental strand, 24136675 - 24136584
Alignment:
Q  642 gaaccaagacaagctgaaccaaagtaagcaaaacagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagactc 733  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24136675 gaaccaagacaagctgaaccaaagcaaccaagacagacatagacaaacaaccaattaaccaaacacaaacacaatgaaacacacgaagactc 24136584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 376 - 507
Target Start/End: Complemental strand, 24137021 - 24136889
Alignment:
Q  376 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccata 474  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| || ||||||||||||||| |    
T  24137021 aaccaaattgtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaa 24136922  T
Q  475 atgtgagaactcgattcacccaacaagcaaatt 507  Q
     |||||||| |||  ||||| ||||| ||||||    
T  24136921 ttgtgagaagtcggctcaccaaacaaccaaatt 24136889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 9512116 - 9512024
Alignment:
Q  109 aaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||   |||||||||||    
T  9512116 aaagaatcatcaaaagtgggagaagtgcaatcaaaagaatcaaaagggggagaaatgcaatcaatgagaagaaccaaaacaaggagaagtgca 9512024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 9511845 - 9511777
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 413  Q
    ||||||||||||||||||||||||||||||||||| || |||||| | ||| |||||||||||| ||||    
T  9511845 aaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 11335370 - 11335437
Alignment:
Q  324 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  11335370 aaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 9511899 - 9511811
Alignment:
Q  324 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacc 410  Q
    ||||||||| ||||||||  ||||| ||||||||||| | |  ||||||||||||||||||||||||| | ||| ||||||||||||||    
T  9511899 aaagaatcaaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaacc 9511811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 11335335 - 11335423
Alignment:
Q  204 agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac 292  Q
    ||||||| ||| ||||||||||| | ||||||| ||||||| ||||||||||   ||||||||||||||||||| || | |||||||||    
T  11335335 agaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaac 11335423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 11335330 - 11335391
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag 197  Q
    |||||||||||||||| |||||||||| |  ||||||||| ||||| |||||||||||||||    
T  11335330 caatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaag 11335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 9511981 - 9511926
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggg 191  Q
    |||| ||||||||||| | |||||||| | |||||||||||||||| |||||||||    
T  9511981 caatgagaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaagggg 9511926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 481
Target Start/End: Original strand, 11335371 - 11335437
Alignment:
Q  417 aagaatcaaaagggg-agaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgag 481  Q
    ||||||||||||||| ||||||||||||||||| ||||  || ||||||||||||||| | ||||||    
T  11335371 aagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 675 - 732
Target Start/End: Original strand, 11335661 - 11335716
Alignment:
Q  675 cagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 732  Q
    |||||| |||| |||||||||||||||| ||||||| |||  ||||||||||||||||    
T  11335661 cagacagagacgaacaaccaattaaccaaacacaaataca--gaaacacacgaagact 11335716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 507
Target Start/End: Complemental strand, 24137136 - 24137044
Alignment:
Q  416 gaagaatcaaaaggggaga-agaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 507  Q
    |||||| ||||||||| || | |||||||||||| ||||| |  ||||||||||||||| |||||||||||| || ||||| ||||| ||||||    
T  24137136 gaagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaacca-aatgtgagaactagactcaccaaacaaccaaatt 24137044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 5e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 286 - 571
Target Start/End: Complemental strand, 20242183 - 20241903
Alignment:
Q  286 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 384  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  20242183 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 20242085  T
Q  385 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaac 484  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20242084 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 20241985  T
Q  485 tcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 571  Q
    |||| ||||| |||||||||||||||||||||      ||| | ||||||||| ||||||| |||||| ||| ||||||||||||||    
T  20241984 tcgactcaccaaacaagcaaattatgagtgct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcac 20241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 315 - 571
Target Start/End: Original strand, 20250913 - 20251164
Alignment:
Q  315 aaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 413  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| |||||||||| ||||||    
T  20250913 aaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 20251011  T
Q  414 ttgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagt 513  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  20251012 ttgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagt 20251111  T
Q  514 gctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 571  Q
    |||      ||| | ||||||||| ||||||| |||||| ||| ||||||||||||||    
T  20251112 gct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcac 20251164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 315 - 507
Target Start/End: Complemental strand, 20242247 - 20242054
Alignment:
Q  315 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 412  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  20242247 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 20242149  T
Q  413 attgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 507  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||| | ||||||    
T  20242148 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaatt 20242054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 293 - 415
Target Start/End: Original strand, 20250983 - 20251105
Alignment:
Q  293 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 391  Q
    ||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  20250983 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaa 20251081  T
Q  392 gtcggctcaccaaacaaccaaatt 415  Q
     ||| |||||||||||| ||||||    
T  20251082 ctcgactcaccaaacaagcaaatt 20251105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 20242391 - 20242326
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20242391 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 20250769 - 20250834
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20250769 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20250834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 5e-89; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 286 - 571
Target Start/End: Complemental strand, 44338506 - 44338226
Alignment:
Q  286 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 384  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  44338506 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 44338408  T
Q  385 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaac 484  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  44338407 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 44338308  T
Q  485 tcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 571  Q
    |||| ||||| |||||||||||||||||||||      ||| | ||||||||| ||||||| |||||| ||| ||||||||||||||    
T  44338307 tcgactcaccaaacaagcaaattatgagtgct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcac 44338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 315 - 507
Target Start/End: Complemental strand, 44338570 - 44338377
Alignment:
Q  315 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 412  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  44338570 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 44338472  T
Q  413 attgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 507  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||| | ||||||    
T  44338471 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaatt 44338377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 286 - 507
Target Start/End: Original strand, 15623046 - 15623269
Alignment:
Q  286 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 383  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||| ||||||||||||||| ||||||||||||||||||     
T  15623046 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaa- 15623144  T
Q  384 tgtgagaagtcggctcaccaaacaaccaaattgaagaatc-aaaaggggagaagaaaccaaattgtaagcacac-gctcaccaaacaaccataatgtgag 481  Q
    |||||||| | | |||||||||||||||||||||||||||   | ||||||||||||| ||||||| ||||| |  |||||||||||| || ||||||||    
T  15623145 tgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaatca-aatgtgag 15623243  T
Q  482 aactcgattcacccaacaagcaaatt 507  Q
    |||| || ||||| ||||| ||||||    
T  15623244 aactagactcaccaaacaaccaaatt 15623269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 416 - 571
Target Start/End: Original strand, 46963798 - 46963953
Alignment:
Q  416 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgc 515  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| |    
T  46963798 gaagaataaaaaggggagaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttc 46963897  T
Q  516 tttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 571  Q
    || ||  ||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  46963898 ttgacccaccaaacaaacaaatgaacaaaccaattgtgagcactattttgactcac 46963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 259 - 448
Target Start/End: Original strand, 15623104 - 15623303
Alignment:
Q  259 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaacc 348  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||||| | |||||||  ||||||     
T  15623104 agaaacaaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaaca 15623203  T
Q  349 aaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaagaaaccaaattg 447  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||| | | ||||||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  15623204 aaattgtgagcactcaactcaccaaacaatcaaat-gtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaaccaaattg 15623302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 46963416 - 46963600
Alignment:
Q  17 catcaaccaatcaaagagaga--accatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaa 114  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||      |||||||||| || ||||||||||    
T  46963416 catcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacataaga------accaatagaggag-aaccaaagaa 46963508  T
Q  115 tcatcaaaagcgggagaaatgcaatcagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 201  Q
    |||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||| ||||| |||||| ||||| ||||||||||||||    
T  46963509 tcatcaaaagtgggagaagtgcaatcagaagaatcaaaaaaggggggagaagtgcaatgcaatcggaagaatcaaaaggggggagaagtgca 46963600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 337 - 507
Target Start/End: Original strand, 15623006 - 15623176
Alignment:
Q  337 ggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaa 435  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||  | ||||||||    
T  15623006 ggggaagaaaccgaatcgtgagcacacgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaa 15623104  T
Q  436 gaaaccaaattgtaagcacac-gctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 507  Q
    ||||| ||||||| ||||| |  ||||||||||||||| |||||||||||| || ||||| ||||| ||||||    
T  15623105 gaaacaaaattgtgagcactcaactcaccaaacaacca-aatgtgagaactagactcaccaaacaaccaaatt 15623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 21814053 - 21813955
Alignment:
Q  104 taaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaa-ccaaaagggggagaagtgca 201  Q
    ||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||    
T  21814053 taaccaaagaatcatcaaaagtgggagaagtgcaattagaacaatcaaaagggggagaaatacaatgaatcagaagaatcaaaaagggagagaagtgca 21813955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 15623197 - 15623306
Alignment:
Q  259 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaa--gggggaagaaacc 348  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||| ||| |  ||| |||||||||    
T  15623197 agaaacaaaattgtgagcactcaactcaccaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaacc 15623296  T
Q  349 aaattgtgag 358  Q
    ||||||||||    
T  15623297 aaattgtgag 15623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 21813887 - 21813824
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 408  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | | | ||||||||||||    
T  21813887 aaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 46963815 - 46963889
Alignment:
Q  340 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 415  Q
    ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  46963815 gaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 46963889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 11828573 - 11828649
Alignment:
Q  340 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    ||||||||||||||||||| |||  |||||||||||||||||| |||||| |  || ||||||| ||||||||||||    
T  11828573 gaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattg 11828649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 46963681 - 46963737
Alignment:
Q  132 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 188  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  46963681 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 46963737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 44338714 - 44338649
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  44338714 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 44338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 11828609 - 11828653
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  11828609 aaccaaaatgtgagcacccgactcaccagacaaccaaattgtgag 11828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 24487088 - 24487128
Alignment:
Q  348 caaattgtgagcactcgactcaccaaacaaccaaattgtga 388  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtga 24487128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 21813940 - 21813850
Alignment:
Q  325 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 413  Q
    |||||||| ||||||||  | ||||||||||||| | |||    ||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  21813940 aagaatcaaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaa 21813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 24486942 - 24486984
Alignment:
Q  147 atcaaaagggggagaaatacaatcaatcagaagaaccaaaagg 189  Q
    ||||||||||| |||| |||||||||||||||||| |||||||    
T  24486942 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaagg 24486984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 15629705 - 15630107
Alignment:
Q  17 catcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatc 116  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||  |||||||||||      |||||||||| |||||||||| ||||    
T  15629705 catcaaccaatcaaagagagaaccatccaaaaaatagaaccagtagagagatgcaaccatacataaga------accaatagaggagtaaccaaaaaatc 15629798  T
Q  117 atcaaaagcgggagaaatgcaatcagaagaatcaaaa--gggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgcatt-----agaag 208  Q
    ||||||||  |||||| ||||||||||||||||||||  ||||||||| | |||| |||||| ||||| |||| | |||||||||||| |     | |||    
T  15629799 atcaaaagttggagaagtgcaatcagaagaatcaaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcaaaag 15629898  T
Q  209 aaccaaaagggggagaagcgcaat-caattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaa 299  Q
    ||| |||||||||||||| ||||| |||| | ||||| || ||||||  | |||||||||||||||||||||| | |||||||||        |||||||    
T  15629899 aacaaaaagggggagaagtgcaatgcaatcagaagaatcataaggggaga-agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagaa 15629997  T
Q  300 ctagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggct 398  Q
     ||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||    
T  15629998 ttagactcactaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgact 15630097  T
Q  399 caccaaacaa 408  Q
    ||||||||||    
T  15630098 caccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 325 - 500
Target Start/End: Original strand, 15629931 - 15630107
Alignment:
Q  325 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 423  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||    
T  15629931 aagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat-gtgagaattagactcactaaacaaccaaattgaagaatc 15630029  T
Q  424 aaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaa 500  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||| |||||| ||||| |||||    
T  15630030 aaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 19825091 - 19825157
Alignment:
Q  350 aattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    |||||||||||||  ||||||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattg 19825157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 15629930 - 15629997
Alignment:
Q  416 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaa 483  Q
    ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  15629930 gaagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca-aatgtgagaa 15629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 19825117 - 19825161
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  19825117 aaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag 19825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 9168081 - 9168144
Alignment:
Q  21 aaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataaga 84  Q
    ||||| ||||||||| || ||||||||||| ||||||| |||||||||| || |||||||||||    
T  9168081 aaccagtcaaagagaaaatcatccaaacaaaagaaccagtagagagaagtagccatacataaga 9168144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 3775072 - 3775188
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag---tgcattagaagaaccaaaagggggagaagcgcaat 232  Q
    ||||||||||||||||||| | |||||  |||||| |||||||||| ||||| |||||||||   |  || | ||||| ||||||| ||||||  |||||    
T  3775072 caatcagaagaatcaaaagagagagaa--acaatcgatcagaagaatcaaaatggggagaagcaatcaatcaaaagaatcaaaaggaggagaa--gcaat 3775167  T
Q  233 caattaaaagaaccaaaaggg 253  Q
    |||| ||||||| ||||||||    
T  3775168 caatcaaaagaatcaaaaggg 3775188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 12177164 - 12177227
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtg 199  Q
    |||||| |||||||||||||   |||| | ||||||||||||| || |||||||||||||||||    
T  12177164 caatcataagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaaaagggggagaagtg 12177227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 2072366 - 2072440
Alignment:
Q  342 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||| ||||||| |||||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattg 2072440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 2075896 - 2075970
Alignment:
Q  342 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||  |||||||||||||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattg 2075970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 1e-77; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 259 - 571
Target Start/End: Complemental strand, 21862311 - 21861990
Alignment:
Q  259 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg------aaga 344  Q
    |||||||||||||||||||||| | |||||||||        |||||| |||||||||||||||||||||||| ||||||||||||||||      | ||    
T  21862311 agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagagctagactcaccaaacaaccaaattgaagaatcagaagggggggggagagga 21862212  T
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaa-gaatcaaaaggggagaagaaaccaa 443  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21862211 aaccaaatattgagcactcgactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaacgaatcaaaaggggagaagaaaccaa 21862113  T
Q  444 attgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaa 543  Q
    ||||| |||||||||||| |||||||||| |||||||||| |||| ||||| |||||||||||| |||| |||||     || | |||||||||||||||    
T  21862112 attgtgagcacacgctcaacaaacaaccaaaatgtgagaattcgactcaccaaacaagcaaattgtgagcgcttt-----cccaccaaacaaacaaacaa 21862018  T
Q  544 accaattgtaagcgctattttgactcac 571  Q
    ||||||||| ||  ||||||||||||||    
T  21862017 accaattgtgagaactattttgactcac 21861990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 296 - 540
Target Start/End: Complemental strand, 13167604 - 13167359
Alignment:
Q  296 agaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcacca-aacaaccaaattgtgagaag 392  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||||||||||||||  |||||  |||| |||||||     
T  13167604 agaactagactcaccaaacaaccaaattgaagaatcagaagggggagaagaaaccaaactgtgagcactcgactcaccggaacaatgaaat-gtgagaat 13167506  T
Q  393 tcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattca 492  Q
    |   ||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||| ||||||| || | |||||||| |||| |||    
T  13167505 tttactcaccacacaaccaaattgaagaaccaaaaggggagaagacaccaaattgtgagcatacgctcagcaaacaa-caaagtgtgagaattcgactca 13167407  T
Q  493 cccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaa 540  Q
    || ||||||||||||  |||  ||| ||  ||||||||||||||||||    
T  13167406 ccaaacaagcaaattgcgagcacttgacccaccaaacaaacaaacaaa 13167359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 293 - 507
Target Start/End: Complemental strand, 21862363 - 21862142
Alignment:
Q  293 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg---aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    ||||||| ||||||||||||||||||||||| |||||||| || ||||   |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21862363 gtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgag 21862265  T
Q  390 aagtcggctcaccaaacaaccaaattgaagaatcaaaa-----ggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaa 483  Q
    |  | | |||||||||||||||||||||||||||| ||     ||||||| ||||||||||  | ||||| || ||||||||||||||| ||||||||||    
T  21862264 agctagactcaccaaacaaccaaattgaagaatcagaagggggggggagaggaaaccaaatattgagcactcgactcaccaaacaacca-aatgtgagaa 21862166  T
Q  484 ctcgattcacccaacaagcaaatt 507  Q
    || || ||||| ||||| ||||||    
T  21862165 ctagactcaccaaacaaccaaatt 21862142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 9290994 - 9291228
Alignment:
Q  17 catcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatc 116  Q
    ||||||||||||||||||||||| ||||||| |||||||||| || |||||||||  ||||||||| |      |||||||||| |||||||||||||||    
T  9290994 catcaaccaatcaaagagagaacaatccaaataatagaaccagtatagagaagcaaccatacataaca------accaatagagaagtaaccaaagaatc 9291087  T
Q  117 atcaaaagcgggagaaatgcaatcagaagaatc-aaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgc-----attagaaga 209  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||| | |||| |||||| ||||| |||| | |||||||||||     || ||||||    
T  9291088 atcaaaagtgggagaagtgcaatcagaagaatcaaaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcagaaga 9291187  T
Q  210 accaaaa-gggggagaagcgcaatcaattaaaagaaccaaa 249  Q
    ||||||| |||||||||| ||||||||| | ||||| ||||    
T  9291188 accaaaaggggggagaagtgcaatcaatcagaagaatcaaa 9291228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 286 - 403
Target Start/End: Original strand, 28063583 - 28063699
Alignment:
Q  286 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 385  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||| |||||    
T  28063583 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcaaaagggagaagaaaccaaattgtgagcacctgactcaccaaacaacc-aattg 28063681  T
Q  386 tgagaagtcggctcacca 403  Q
    |||| | |||||||||||    
T  28063682 tgagcactcggctcacca 28063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 314 - 472
Target Start/End: Original strand, 28063518 - 28063677
Alignment:
Q  314 caaccaaattaaagaatcagaaggggg--aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacca 411  Q
    ||||||| | ||||||||| |||||||  |||||| ||||||| ||| | || ||| ||||||||||||||| ||||||| | | |||||||||||||||    
T  28063518 caaccaactgaaagaatcaaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaat-gtgagaactagactcaccaaacaacca 28063616  T
Q  412 aattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaacca 472  Q
    |||||||||||||||| |||||||||||||||||||| |||||  | |||||||||||||||    
T  28063617 aattgaagaatcaaaa-gggagaagaaaccaaattgtgagcacctgactcaccaaacaacca 28063677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 377 - 507
Target Start/End: Complemental strand, 21862371 - 21862239
Alignment:
Q  377 accaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaa--ggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccat 473  Q
    |||||| |||||||| | | |||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| || |||||||||||||||     
T  21862371 accaaagtgtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca- 21862273  T
Q  474 aatgtgagaactcgattcacccaacaagcaaatt 507  Q
    ||||||||| || || ||||| ||||| ||||||    
T  21862272 aatgtgagagctagactcaccaaacaaccaaatt 21862239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 22860976 - 22860908
Alignment:
Q  132 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  22860976 aatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaa-ggggagaagtgca 22860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 642 - 732
Target Start/End: Complemental strand, 21861884 - 21861793
Alignment:
Q  642 gaaccaagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 732  Q
    ||||||||||||||||| |||||| || || | ||| |||||||| |||||||||||||||| |||||||||||| || |||||||||||||    
T  21861884 gaaccaagacaagctgagccaaagcaaccagagacatacatagacgaacaaccaattaaccaaacacaaacacaaagagacacacgaagact 21861793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 22861007 - 22860941
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  22861007 caatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgca 22860941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 28063456 - 28063508
Alignment:
Q  105 aaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 157  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28063456 aaccaaagaatcatcaaaagtgggagaaatgcaatcagaaggatcaaaagggg 28063508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 22861008 - 22860917
Alignment:
Q  169 tcaatcagaagaaccaaaagggggagaagtgcatt------agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggg 254  Q
    |||||||||||||||||||||||||||| |||| |      ||||||||||||||||||||||  |||||||||   |||||||||||||||    
T  22861008 tcaatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaagggg 22860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 642 - 730
Target Start/End: Complemental strand, 10741417 - 10741328
Alignment:
Q  642 gaaccaagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaaga 730  Q
    |||| |||||||||||||| |||  || |||| | ||||||| || ||||||||||||| || |||||||||||| ||||||||||||||    
T  10741417 gaacaaagacaagctgaactaaatcaaccaaagatagacataaacgaacaaccaattaatcaaacacaaacacaaagaaacacacgaaga 10741328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 22860869 - 22860797
Alignment:
Q  132 aatgcaatcagaagaatcaaaagggggagaaa--tacaatcaatcagaagaaccaaaag-ggggagaagtgca 201  Q
    |||| ||||||||||||||||| ||||||| |  | ||||||||||||||||||||||| |||||||||||||    
T  22860869 aatggaatcagaagaatcaaaaaggggagagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgca 22860797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 10741569 - 10741529
Alignment:
Q  342 agaaaccaaattgtgagcactcgactcaccaaacaaccaaa 382  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  10741569 agaaaccaaattgtgagtactcgactcaccgaacaaccaaa 10741529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 13097970 - 13097903
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 412  Q
    |||||||||||||||||| | |||| ||||||| ||| ||||||| | ||| |||| |||||||||||    
T  13097970 aaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaa 13097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 728
Target Start/End: Complemental strand, 13167269 - 13167182
Alignment:
Q  642 gaaccaagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaa 728  Q
    ||||||||||||||||| |||||| || || | ||| ||||| || |||||||||||||||| | |||||||||  || |||||||||    
T  13167269 gaaccaagacaagctgacccaaagcaaccagagacaaacataaacgaacaaccaattaaccaaatacaaacacagagagacacacgaa 13167182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 22860829 - 22860762
Alignment:
Q  136 caatcagaagaatcaaaaggggg-agaaatacaat-caatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||| |||||||||| |||| | |||| |||||||||||| |||||||| ||||||||||    
T  22860829 caatcagaagaaccaaaaggggggagaagtgcaatgcaatcagaagaatcaaaagggagagaagtgca 22860762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 13097932 - 13097895
Alignment:
Q  352 ttgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  13097932 ttgtgagcactcgactcatcaaacaaccaatttgtgag 13097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 340 - 571
Target Start/End: Complemental strand, 16870820 - 16870588
Alignment:
Q  340 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat--caaaaggggagaaga 437  Q
    |||||||||||||| |||||||||||||||| |||||||||||| || |||| | | ||||| || |||||||||||||||||  |||||||||||||||    
T  16870820 gaagaaaccaaattatgagcactcgactcacgaaacaaccaaat-gtaagaacttgactcactaatcaaccaaattgaagaatatcaaaaggggagaaga 16870722  T
Q  438 aaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaac 537  Q
    ||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| ||| ||  ||||||||||||||     
T  16870721 aaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaaat 16870622  T
Q  538 aaacaaaccaattgtaagcgctattttgactcac 571  Q
     |||||||||||||| ||| ||||||||||||||    
T  16870621 gaacaaaccaattgtgagcactattttgactcac 16870588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 16871410 - 16871262
Alignment:
Q  17 catcaaccaatcaaagagaga--accatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaa 114  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||      ||||||||||||| || ||||||||||    
T  16871410 catcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacata------agaaccaatagaggag-aaccaaagaa 16871318  T
Q  115 tcatcaaaagcgggagaaatgcaatcagaagaatc-aaaagggggagaaatacaat 169  Q
    |||||||||| ||||||| |||||| ||||||||| |||| |||||||| ||||||    
T  16871317 tcatcaaaagtgggagaagtgcaattagaagaatcaaaaaaggggagaagtacaat 16871262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 132 - 415
Target Start/End: Complemental strand, 16870955 - 16870652
Alignment:
Q  132 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgc----------attagaagaaccaaaagggg 220  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||  ||||||||| |          ||  |||||||||| | |||    
T  16870955 aatgcaatcagaagaaccaataggtggagaaatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatcggaagaaccaaca-ggg 16870857  T
Q  221 gagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattc--------accaaacgtgagaactagactcaccaa 312  Q
    |||||| ||||||||| | |||||  |||| ||||   |||||||||||| ||||||||| | ||        |||||| || |||||| ||||||| ||    
T  16870856 gagaagtgcaatcaatgagaagaataaaaaaggggagaagaaaccaaattatgagcactcgactcacgaaacaaccaaatgtaagaacttgactcactaa 16870757  T
Q  313 acaaccaaattaaaga--atcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 409  Q
     |||||||||| ||||  |||| |||||| ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| ||||||||||||     
T  16870756 tcaaccaaattgaagaatatcaaaaggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaag 16870658  T
Q  410 caaatt 415  Q
    ||||||    
T  16870657 caaatt 16870652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 376 - 446
Target Start/End: Complemental strand, 54147905 - 54147835
Alignment:
Q  376 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaatt 446  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54147905 aaccaaattgtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaatt 54147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 642 - 732
Target Start/End: Complemental strand, 16870332 - 16870242
Alignment:
Q  642 gaaccaagacaagctgaaccaaagtaagcaaaacagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 732  Q
    |||||||||||| ||||||||||  || ||| | |||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  16870332 gaaccaagacaaactgaaccaaaacaaccaagaaagacatagacgaacaaccaattaaccaaacacaaacacaaagaaacgcacgaagact 16870242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 54147896 - 54147811
Alignment:
Q  293 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaa 377  Q
    ||||| ||| |||||||||||||||||| || |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||    
T  54147896 gtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaattatgagcactcgacccaccaaacaa 54147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 54147802 - 54147717
Alignment:
Q  325 aagaatcagaagggggaa-gaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 409  Q
    |||||||| ||||||||| |||||||||||||||||||   |||||||||||||||||| |||||||| | | |||||||||||||    
T  54147802 aagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaac 54147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 54147843 - 54147718
Alignment:
Q  376 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagca-cacgctcaccaaacaaccata 474  Q
    ||||||||| |||| | ||| | |||||||||| |||   ||||||||||||||||  ||||||||||||||| |||| ||  ||||||||||||||| |    
T  54147843 aaccaaattatgagcactcgacccaccaaacaatcaatcagaagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaa 54147744  T
Q  475 atgtgagaactcgattcacccaacaa 500  Q
    ||||||||||| || ||||| |||||    
T  54147743 atgtgagaactagactcaccaaacaa 54147718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 54147926 - 54147869
Alignment:
Q  325 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 381  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54147926 aagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 54147964 - 54147912
Alignment:
Q  105 aaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 157  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  54147964 aaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaagggg 54147912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 42265492 - 42265426
Alignment:
Q  346 accaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 413  Q
    ||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||||||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaa 42265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 24225742 - 24225681
Alignment:
Q  140 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| || | |||||||    
T  24225742 cagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgca 24225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 54147927 - 54147870
Alignment:
Q  416 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaacca 472  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  54147927 gaagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca 54147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 16871172 - 16871105
Alignment:
Q  136 caatcagaagaatcaaaa--gggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||| |||||||||  ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  16871172 caatcagacgaatcaaaaaagggggagaagtgcaatcaatcagaagaaccaaaagtgggagaagtgca 16871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 16871105 - 16871033
Alignment:
Q  132 aatgcaatcagaagaatcaaaag-ggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 201  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  16871105 aatgcaatcagaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 16871033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 24225546 - 24225502
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  24225546 aaccaaattgtaagcactcgattcaccaaacaaccaaattgtgag 24225502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 24225735 - 24225647
Alignment:
Q  117 atcaaaagcgggagaaatgcaatca----gaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||| ||||||||||||||||    ||||||||||||| || | || | |||| ||||||||||| ||||| |||||||||||||    
T  24225735 atcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaaaggggagaagtgca 24225647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 6e-55; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 240 - 481
Target Start/End: Original strand, 1173283 - 1173535
Alignment:
Q  240 aagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatc 331  Q
    ||||| ||||||||||   |||||||||||||||||||||| | |||| ||||        ||||||||||||||||||||||||||||||| || ||||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaataatc 1173382  T
Q  332 agaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaagg 429  Q
    | ||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||    
T  1173383 aaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaaccaaattgaagaatcaaaagg 1173481  T
Q  430 g-gagaagaaaccaaattgtaagcac-acgctcaccaaacaaccataatgtgag 481  Q
    | |||||||||||||||||| ||||| |  ||||||||||||||| | ||||||    
T  1173482 gcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgag 1173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 8986686 - 8986502
Alignment:
Q  17 catcaaccaatcaaagagaga--accatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaa 114  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||      |||||||||| || ||||||||||    
T  8986686 catcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacataaga------accaatagaggag-aaccaaagaa 8986594  T
Q  115 tcatcaaaagcgggagaaatgcaatcagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 201  Q
    |||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  8986593 tcatcaaaagtgggagaagtgcaatcagaagaatcaaaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 8986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 424 - 571
Target Start/End: Complemental strand, 8986298 - 8986150
Alignment:
Q  424 aaaaggggagaa-gaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacat 522  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| ||| ||      
T  8986298 aaaaggggagaaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgaccc 8986199  T
Q  523 accaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcac 571  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||||||    
T  8986198 accaaacaaacaaatgaacaaaccaattgtgagcactattttgactcac 8986150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 325 - 507
Target Start/End: Original strand, 1173283 - 1173467
Alignment:
Q  325 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat 422  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||| |||||| |||| |||||||| | | |||||||||||||||||||||| |||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaa-tgtgagaactagactcaccaaacaaccaaattgaataat 1173381  T
Q  423 caaaa-ggggagaagaaaccaaattgtaagcac-acgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 507  Q
    ||||| |||||||||||||||||||||  |||| |  ||||||||||||||| |||||||||| | || ||||| ||||| ||||||    
T  1173382 caaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaacca-aatgtgagaattagactcaccaaacaaccaaatt 1173467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 32290863 - 32290742
Alignment:
Q  119 caaaagcgggagaaatgcaatcagaagaatcaaaagggg-gagaaatacaatcaatcagaagaaccaaaa-gggggagaagtgc------attagaagaa 210  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| | |||||||||||      || |||||||    
T  32290863 caaaagtgggagaagtgcaatcagaagaatcaaaaggggagagaaatgcaatcaatcagaagaactaaaatgagggagaagtgcaatacaatcagaagaa 32290764  T
Q  211 ccaaaagggggagaagcgcaat 232  Q
    |||||||||||||||| |||||    
T  32290763 ccaaaagggggagaagtgcaat 32290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 9047993 - 9048116
Alignment:
Q  17 catcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatc 116  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||| ||| |||||||||||      ||||  ||||||| |||||||||| ||||    
T  9047993 catcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagaaaaggagtcatacata------agaattaatagaggagtaaccaaaaaatc 9048086  T
Q  117 atcaaaagcgggagaaatgcaatcagaaga 146  Q
    ||||||||  | |||| |||||||| ||||    
T  9048087 atcaaaagtagtagaactgcaatcaaaaga 9048116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 1173133 - 1173268
Alignment:
Q  60 tagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaaga-----atcaaaag 154  Q
    |||||||||||||||||||| ||||      |||||||||| || |||||||||||||||||||| || |||| |||||||||||||     ||||||||    
T  1173133 tagagagaagcagtcatacaaaaga------accaatagaggagcaaccaaagaatcatcaaaagtggaagaagtgcaatcagaagaagaatatcaaaag 1173226  T
Q  155 -ggggagaaatacaatcaatcagaagaaccaaaagggggaga 195  Q
     |||||| ||| |||||||||||||||| ||| || ||||||    
T  1173227 tggggagcaatgcaatcaatcagaagaatcaacagagggaga 1173268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 32290916 - 32290862
Alignment:
Q  17 catcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagca 71  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  32290916 catcaaccaatcaaagagagaaccatccaaacaaaagaaccagtagagagaagca 32290862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 38583967 - 38584033
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 201  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  38583967 caatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgca 38584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 461 - 571
Target Start/End: Original strand, 38584195 - 38584301
Alignment:
Q  461 accaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgcta 560  Q
    |||||||||||| |||||||| |||||| ||||| |||||||||||| ||||||| ||||  ||||||||||| |||||||   | |||||| ||| |||    
T  38584195 accaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgagtgc-ttacccaccaaacaaacgaacaaac---caaattgtgagcacta 38584290  T
Q  561 ttttgactcac 571  Q
    |||||||||||    
T  38584291 ttttgactcac 38584301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 8986287 - 8986214
Alignment:
Q  341 aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 415  Q
    |||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  8986287 aagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 8986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 38583998 - 38584102
Alignment:
Q  132 aatgcaatcagaagaatcaaaagggggagaa-----atacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggg 220  Q
    |||||||||||||||||||||||||||||||     || |||||| |||||| || ||||||||||||||||||      |||||||||| |||||||||    
T  38583998 aatgcaatcagaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggg 38584097  T
Q  221 gagaa 225  Q
    |||||    
T  38584098 gagaa 38584102  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 8986424 - 8986368
Alignment:
Q  132 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 188  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  8986424 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 8986368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 38583934 - 38584035
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggggagaagcgc 229  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||| |||||||| ||||| |||      || ||||||| ||||||||||||||| ||    
T  38583934 caatcagaagaatcaaa-gggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgc 38584032  T
Q  230 aat 232  Q
    |||    
T  38584033 aat 38584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 38584202 - 38584246
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  38584202 aaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgag 38584246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 1173560 - 1173622
Alignment:
Q  353 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 415  Q
    |||||||||| ||||||||||||||||||| | |||| | ||| |||||||||||| ||||||    
T  1173560 tgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaatt 1173622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 32290775 - 32290709
Alignment:
Q  136 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 201  Q
    |||||||||||| |||||||||||||| | |||| |||||||||| |||||||  ||||||||||||    
T  32290775 caatcagaagaaccaaaagggggagaagtgcaatgcaatcagaaggaccaaaaatgggagaagtgca 32290709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 38584083 - 38584176
Alignment:
Q  325 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    |||||||| ||||||||  | ||| ||||||||||||| |  ||||||||||||||||||||||||| | |   |||||||||| |||||||||    
T  38584083 aagaatcaaaagggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattg 38584176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 38584168 - 38584242
Alignment:
Q  346 accaaattgtgagcactcgactcacca----aacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    ||||||||||||||||| |||||||||    |||||||||| |||||| | ||| |||||||||||| |||||||    
T  38584168 accaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattg 38584242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 38584136 - 38584180
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  38584136 aaccaaattgtgagcacttaactcaccaaactaccaaattgtgag 38584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 1173573 - 1173627
Alignment:
Q  458 ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgag 512  Q
    ||||||||||||||| ||| |||| |||||| ||||| ||||| |||||||||||    
T  1173573 ctcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgag 1173627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 345 - 415
Target Start/End: Original strand, 1173583 - 1173653
Alignment:
Q  345 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 415  Q
    ||||||| | |||| |||||||||||||||||| |||||| |||| | ||| | |||||||||| ||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaatt 1173653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 50296041 - 50295902
Alignment:
Q  17 catcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||      ||||||||||||  |||||||||||||||    
T  50296041 catcaaccaatcaaagagagaaccatccaaacaatagaaccagtatagagaagcagccatacata------agaaccaatagaagagtaaccaaagaatc 50295948  T
Q  117 atcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaa 162  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||    
T  50295947 atcaaaagtgggagaagtgcaatcagaagaatcaaaagagggagaa 50295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 46691794 - 46691955
Alignment:
Q  16 acatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaat 115  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||  ||||||||||| |   ||||||||||||| ||||||||||||||    
T  46691794 acatcaaccaatcaaatagagaaccatccaaacaatagaaccaatagagagaag--gtcatacataata---agaaccaatagaggagtaaccaaagaat 46691888  T
Q  116 catcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaat-caatcagaagaa 181  Q
    ||||||||| ||||||| ||||||||||||||| |||||||| | || | |||| ||||||||||||    
T  46691889 catcaaaagtgggagaagtgcaatcagaagaattaaaaggggaaaaagtgcaatgcaatcagaagaa 46691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 340 - 512
Target Start/End: Original strand, 46691968 - 46692141
Alignment:
Q  340 gaagaaaccaaattgtgagcactcgactcacc-aaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggg-gagaaga 437  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||||| |||||||    
T  46691968 gaagaaaccaaattgtgaacactcgactcaccaaaacaaccaaa-tgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaaga 46692066  T
Q  438 aaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgag 512  Q
    ||||||||||| ||||| || ||||||||||||| | |||||||||| | || ||||| ||||| |||||| ||||    
T  46692067 aaccaaattgtgagcactcgactcaccaaacaacta-aatgtgagaattagactcaccaaacaaccaaattgtgag 46692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 46692006 - 46692137
Alignment:
Q  286 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagg--gggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 383  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||| ||||  | ||||||||||||||||||||||||||||||||||||||| |||     
T  46692006 accaaatgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaactaaa- 46692104  T
Q  384 tgtgagaagtcggctcaccaaacaaccaaattg 416  Q
    |||||||| | | ||||||||||||||||||||    
T  46692105 tgtgagaattagactcaccaaacaaccaaattg 46692137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 42530824 - 42530711
Alignment:
Q  325 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 423  Q
    |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||    
T  42530824 aagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaattaaagaatc 42530726  T
Q  424 aaaaggggagaagaa 438  Q
    |||| ||||||||||    
T  42530725 aaaaagggagaagaa 42530711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 416 - 508
Target Start/End: Complemental strand, 42530825 - 42530733
Alignment:
Q  416 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatta 508  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||    
T  42530825 gaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatta 42530733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 42531090 - 42530947
Alignment:
Q  60 tagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaag----- 154  Q
    ||||||||||||||||||||||| |      ||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||         
T  42531090 tagagagaagcagtcatacataaaa------accaatataggagtaaccaaagaatcattaaaagtgggagaagtgcaatcagaagaatcaaaagggggg 42530997  T
Q  155 --ggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgca 201  Q
      |||| ||||| |||||||||||||||||| |||| || ||||||||||    
T  42530996 gtggggggaaatgcaatcaatcagaagaaccgaaagcggagagaagtgca 42530947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 646 - 732
Target Start/End: Complemental strand, 50295379 - 50295292
Alignment:
Q  646 caagacaagctgaaccaaagtaagcaaa-acagacatagacaaacaaccaattaaccatacacaaacacaatgaaacacacgaagact 732  Q
    |||||||||||||||||||| || || | |||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  50295379 caagacaagctgaaccaaagcaaccatagacagacatagacaaacaaccaattaatcaaacacaaacacaaagaaacacaccaagact 50295292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 132 - 332
Target Start/End: Complemental strand, 42530947 - 42530725
Alignment:
Q  132 aatgcaatcagaagaatcaaaaggggg-agaaatacaatcaatcagaagaaccaaaagggggagaag---------tgc-----attagaagaaccaaaa 216  Q
    ||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||| ||||||||         |||     || ||||||| |||||    
T  42530947 aatgcaatctgaataatcaaaaggggggagaagtgcaatcaatcagaagaaccaaaagagggagaagtaagtgaaatgcaatcaatcagaagaatcaaaa 42530848  T
Q  217 gggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac---------gtgagaactagactc 307  Q
    |||| ||||| ||||||||| | ||||| |||||||||  | |||||||||||||||||||| |   |||||||||         ||||||||| |||||    
T  42530847 ggggaagaagtgcaatcaatcagaagaatcaaaaggggaga-agaaaccaaattgtgagcacac-gctcaccaaacaaccaaagtgtgagaactcgactc 42530750  T
Q  308 accaaacaaccaaattaaagaatca 332  Q
    |||||||||||||||||||||||||    
T  42530749 accaaacaaccaaattaaagaatca 42530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 50295586 - 50295550
Alignment:
Q  353 tgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgag 50295550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 7304 - 7341
Alignment:
Q  352 ttgtgagcactcgactcaccaaacaaccaaattgtgag 389  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7304 ttgtgagcactcgactcaccaaacaaccaatttgtgag 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 154938 - 154968
Alignment:
Q  361 ctcgactcaccaaacaaccaaattgtgagaa 391  Q
    |||||||||||||||||||||||||||||||    
T  154938 ctcgactcaccaaacaaccaaattgtgagaa 154968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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