View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9734_low_2 (Length: 576)
Name: NF9734_low_2
Description: NF9734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9734_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 46642767 - 46643324
Alignment:
| Q |
1 |
caaccaattctcaggaacatttccggaggttgttctttgcattccttcattaaaatacttagacataagatacaacaattttcaaggaaatgttcctaaa |
100 |
Q |
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| T |
46642767 |
caaccaattctcaggaacattcccggaggttgttctttgcattccttcattaaaatacttggacataagatacaacaattttcaaggaaatgttcctaaa |
46642866 |
T |
|
| Q |
101 |
ggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagcttctgttgttg |
200 |
Q |
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| T |
46642867 |
ggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagcttctgttgttg |
46642966 |
T |
|
| Q |
201 |
tgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaggatacaatcaatgagataattatgacgaacagcaaaatgaaagg |
300 |
Q |
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| T |
46642967 |
tgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaagatacaatcaacgagataattatgacgaacagcagaatgaaagg |
46643066 |
T |
|
| Q |
301 |
ctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagtatcagtggaatg |
400 |
Q |
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| T |
46643067 |
ctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagtatcagtggaatg |
46643166 |
T |
|
| Q |
401 |
aaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttggagaatttgacgtattcgt |
500 |
Q |
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| T |
46643167 |
aaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgaagaatttaacgtattcgt |
46643266 |
T |
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| Q |
501 |
ataattactttagtggtgaatcagagatttgtgttaagttggatgataaggatgatac |
558 |
Q |
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| T |
46643267 |
ataattacctgagtggtgaatcagagatttgtgttaagttggatgataaggatgatac |
46643324 |
T |
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