View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9734_low_3 (Length: 500)
Name: NF9734_low_3
Description: NF9734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9734_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 500
Target Start/End: Complemental strand, 2409031 - 2408539
Alignment:
| Q |
13 |
atccaacaacatatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcac |
112 |
Q |
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| T |
2409031 |
atccaacaacatatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcat-aagggaatcaaaatacctcaaacacaaatatttcac |
2408933 |
T |
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| Q |
113 |
ttgttttccatgcacaatttcgattgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtca |
212 |
Q |
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| T |
2408932 |
ttgttttccatgcacaatttcgattgttgatgagcttcaaagcacggaaatgatttagcaccaaagaacattatacatcacttcttcttccttgccgtca |
2408833 |
T |
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| Q |
213 |
caagcttgcaactctttattcccctttggatttctatttctcaaaaccctaaaatgcagggacgaaaataaaaaggatgtttttggggaaaaaaccaatt |
312 |
Q |
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| T |
2408832 |
caagcttgcaactctttattcccctttggatttctatttctcaaaaccctaaaatgcaggggcgaaaat-aaaaggatgttttgggggaaaaaattgatt |
2408734 |
T |
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| Q |
313 |
gccacgtgtgactcaatcacttcaatctcacatccccttcattttacacgccaatctcctttt-ccacatatgt-ttttgttaaccgcgactaacgtcaa |
410 |
Q |
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| T |
2408733 |
gccacgtgtgactcaatcacttcaatctcacatccccttcattttacacgtcaatctccttttgccacatatgtgttttgttaaccgcaactaacgtcaa |
2408634 |
T |
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| Q |
411 |
gg----atcattaacaaaccaatttgatcttttaagggttgtctccacagaagaaaaagatacatggacaaaatcaaag-aaacgctaactcaca |
500 |
Q |
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| T |
2408633 |
ggatcaatcattaacaaaccaatttgatcttttaagggttgtctccacagaagaaaaagatacatggacaaaatcaaagaaaacgctaactcaca |
2408539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 2412485 - 2412050
Alignment:
| Q |
19 |
caacatatgaacctagaaatcactttgatggacaatgacaagttggaaaatattcatcaagggaatcaaaatacctcaaacgcaaatatttcacttgttt |
118 |
Q |
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|||||| |||||| | ||||||||||||| | || |||||||||| ||| ||||||| ||||||||||||||||||||||| |||| ||| ||||||| | |
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| T |
2412485 |
caacatctgaaccaataaatcactttgattggcactgacaagttgcaaactattcat-aagggaatcaaaatacctcaaacacaaagattccacttgtct |
2412387 |
T |
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| Q |
119 |
tccatgcacaatttcgattgttgatgagcttcaaagcacggtaatgatttagcaccaaagaacagtatacatcacttcttcttccttgccgtcacaagct |
218 |
Q |
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| T |
2412386 |
tcg-tgcacgattttgatctttgatgagctttgaagcgctaaattgatttagcaccaacgaacaataaacatcatttcttcttcctcaccatcacaagct |
2412288 |
T |
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| Q |
219 |
tgcaactctttattcccctttggatttctatttctcaaaaccctaaaatgcagggacgaaaataaaaaggatgtttttggggaaaaaaccaattgccacg |
318 |
Q |
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| T |
2412287 |
cgcaactctttattcccctttgactctttatttctcataaccctaaaatgcagggacaaaaatgaaaaatgggttttt-gggaaaataccgattgccaca |
2412189 |
T |
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| Q |
319 |
tgtgactcaatcacttcaatctcacatccccttcattttacacgccaatctcctttt-ccacatatgt-ttttgttaaccgcgactaacgtcaaggatca |
416 |
Q |
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| T |
2412188 |
tgtgactcgatcgcctacatctcacatccccttcattttacacgtcaatatccttttgccacatatgtgttttcttaaaagggattgacgtcaaggacta |
2412089 |
T |
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| Q |
417 |
ttaacaaaccaatttgatcttttaagggttgtctccaca |
455 |
Q |
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|||||| | |||||||||||||||||||||| |||||| |
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| T |
2412088 |
ttaacatatgaatttgatcttttaagggttgtatccaca |
2412050 |
T |
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