View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9734_low_4 (Length: 458)
Name: NF9734_low_4
Description: NF9734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9734_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 29827384 - 29826988
Alignment:
| Q |
18 |
agacaaaattacaaaaatattctttcacataaggtgtatggagtagggaaaaaagggtgtcaacataacattattgtaaaacacaatgtgaaagatggtc |
117 |
Q |
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| T |
29827384 |
agacgaaattacaaaaatattctttcacatgaggcgtatggagtagggaaaaaagggtgtcaacataacatcattgtaaaacacaatgtgaaagatggtc |
29827285 |
T |
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| Q |
118 |
gtacaatctggtgtgtggtttatagcattcgttgaatttgcacgacatgtttcccgtgcaattttttattttcaagatcaaatacatctttaaacgagta |
217 |
Q |
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| T |
29827284 |
gtacaatctggtgtgtggtttatagcattcgttcaatttgcacgacatgtttcccgtgcaattttttattttcaagatcaaatacatctttaaacgagta |
29827185 |
T |
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| Q |
218 |
ctttgttttccctattccttaaccatcaatcactcatgtgcatgtttcgtcttgtgagcataactaaatactcttagtttgatgctttctaaacaatcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29827184 |
ctttgttttccctattccttaaccatcaatcactcatgtgcatgtttcgtcttgtgagcataactaaatactcttagtttgatgctttctaaacaatcat |
29827085 |
T |
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| Q |
318 |
cacgtttttactttaatctctacatggtataaataggacataaatttcatagtaaaaaatacagagaattttacaacatactcaagccaaactaaat |
414 |
Q |
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| T |
29827084 |
cacgtttttagtttaatctctacatggtataaataggacataaatttcatagtaaaaaatacagagacttttacaacatactcaagccaaactaaat |
29826988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 29477437 - 29477403
Alignment:
| Q |
60 |
gtagggaaaaaagggtgtcaacataacattattgt |
94 |
Q |
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| T |
29477437 |
gtagggaaaaaagggtgtcaacataacattattgt |
29477403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 427
Target Start/End: Complemental strand, 34701953 - 34701862
Alignment:
| Q |
332 |
aatctctacatggtataaataggacataaatttcatagtaaaaaatacagagaattttacaacatactcaagccaaactaaatccagctttcttca |
427 |
Q |
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|||||||| |||||||||| ||| ||||||||||| || ||||||||| | || |||||||||||||||| ||| | ||||||||||||||| |
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| T |
34701953 |
aatctctaaatggtataaacagggcataaatttcagagaaaaaaatac----acttctacaacatactcaagcagaacaacatccagctttcttca |
34701862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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