View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9735_1 (Length: 938)
Name: NF9735_1
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9735_1 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 672 - 913
Target Start/End: Original strand, 4657582 - 4657823
Alignment:
| Q |
672 |
tatttatagaacttatagattgtggttttggacgttgaaatggtgtttatgtttatgtttaacaggaagcatattatgacatgcttgtgaagtatagaga |
771 |
Q |
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| T |
4657582 |
tatttatagaacttatagattgtggttttggacgttgaaatggtgtttatgtttatgtttaacaggaagcatattatgatatgcttgtgaagtatagaga |
4657681 |
T |
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| Q |
772 |
ggaattaacaaggcctatacaagaggctatggatttcatgagaagaatagaaacacagctaaatacactttgcaatggaccccttcggatcttccctggt |
871 |
Q |
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| T |
4657682 |
ggaattaacaaggcctatacaagaggctatggatttcatgagaagaatagaaacacagctaaatacactttgcaatggaccccttcggatcttccctggt |
4657781 |
T |
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| Q |
872 |
gagtagtagtagtactttatcttttttcttaatatattcaat |
913 |
Q |
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| T |
4657782 |
gagtagtagtagtactttatcttttctcttaatatattcaat |
4657823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 383 - 522
Target Start/End: Original strand, 4657320 - 4657459
Alignment:
| Q |
383 |
gtagattggagctccacctgaagtggtggctcgtttggttgcgtctaggcaagaatttgaagcacggcaaagatcttcagttaactcgagagaaacttct |
482 |
Q |
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| T |
4657320 |
gtagattggagctccaccggaagtggtggctcgtttggttgcgtctaggcaagaatttgaagcacggcaaagatcttcagttaactcgagagaaacttct |
4657419 |
T |
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| Q |
483 |
aaagatccagaactagaccaattcatggtacaagggggta |
522 |
Q |
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| T |
4657420 |
aaagatccagaactagaccaattcatggtacaagggggta |
4657459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 4656951 - 4657083
Alignment:
| Q |
16 |
catcatcatcaaggaggaggagggagtcctagcagttctaatggtgaagctgaagctataaaagccaaaatcattgctcatcctcaatattctagtcttt |
115 |
Q |
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| T |
4656951 |
catcatcatcaaggaggaggagggagtccaagcagttctaatgttgaagctgaagctataaaagccaaaatcattgctcatcctcaatattctagtcttt |
4657050 |
T |
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| Q |
116 |
tacaagcttacatggattgtcaaaaggtcacta |
148 |
Q |
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| T |
4657051 |
tacaagcttacatggattgtcaaaaggtcacta |
4657083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 4657132 - 4657248
Alignment:
| Q |
197 |
cttaacccttcccttcaagataagtaaaatactataatcaataattaatgattgtttcagtcaagaattaaatttggactcccaccatcatgataacaat |
296 |
Q |
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| T |
4657132 |
cttaacccttcccttcaagataagtaaaatactataatcaataattaatgattgtttcagtcaagaattaaatttggactcccaccatcatgataacaat |
4657231 |
T |
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| Q |
297 |
ttaaataagcatacccc |
313 |
Q |
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| T |
4657232 |
ttaaataagcatacccc |
4657248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 586 - 656
Target Start/End: Original strand, 4657523 - 4657593
Alignment:
| Q |
586 |
tcttgataatcaataagtttaaattatgtcggcaaaaatctagttgattactgtatctatatttatagaac |
656 |
Q |
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| T |
4657523 |
tcttgataatcaataagtttaaattatgtcggcaaaaatctagttgattactgtatctatatttatagaac |
4657593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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