View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9735_13 (Length: 316)
Name: NF9735_13
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9735_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 358460 - 358758
Alignment:
| Q |
16 |
atccaaaaataatttcgagagcgaatgaaaatacaagtttgttgtatgaacnnnnnnnnnccaagttacttgcttgttgcatgattttacaaagtgttta |
115 |
Q |
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| T |
358460 |
atccaaaaataatttcgagagcgaatgaaaatacaagtttgttgtatgaactttttttttccaagttacttgcttgttgcatgattttacaaagtgttta |
358559 |
T |
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| Q |
116 |
atttcttagtcaaaaagtgcttttaatttatcttcttgtataattcggttgatatttatttagcttatacaaccttgacaaaaatcagctgatatataaa |
215 |
Q |
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| T |
358560 |
atttcttagttaaaaagtgcttttaatttatctt---gtataattcggttgatatttatttagcttatacaaccttgacaaaaatcagctgatatataaa |
358656 |
T |
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| Q |
216 |
tcgaaactattaaaacatctattttcttttggtgctcatccaactc-tttttaggcatagaacatctaaatttaaattgtacaaacttgctttatttctt |
314 |
Q |
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| T |
358657 |
tcgaaactattaaaacatctattttcttttggtgctcatccaactcttttttaggcatagaacatctaaatttaaattgtacaaacttgctttatttctt |
358756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 358750 - 358785
Alignment:
| Q |
116 |
atttcttagtcaaaaagtgcttttaatttatcttct |
151 |
Q |
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| T |
358750 |
atttcttagttaaaaagtgcttttaatttatcttct |
358785 |
T |
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