View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9735_3 (Length: 733)

Name: NF9735_3
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9735_3
NF9735_3
[»] chr5 (15 HSPs)
chr5 (81-517)||(24136981-24137426)
chr5 (425-733)||(24136716-24137012)
chr5 (476-604)||(24136986-24137114)
chr5 (508-639)||(24136889-24137021)
chr5 (241-333)||(9512024-9512116)
chr5 (81-181)||(11320703-11320803)
chr5 (477-545)||(9511777-9511845)
chr5 (456-521)||(11335370-11335437)
chr5 (456-542)||(9511811-9511899)
chr5 (665-730)||(11335479-11335543)
chr5 (336-424)||(11335335-11335423)
chr5 (268-329)||(11335330-11335391)
chr5 (268-323)||(9511926-9511981)
chr5 (549-613)||(11335371-11335437)
chr5 (548-639)||(24137044-24137136)
[»] chr8 (8 HSPs)
chr8 (418-730)||(20241876-20242183)
chr8 (447-730)||(20250913-20251191)
chr8 (447-639)||(20242054-20242247)
chr8 (425-547)||(20250983-20251105)
chr8 (81-197)||(20242437-20242556)
chr8 (81-197)||(20250604-20250723)
chr8 (268-333)||(20242326-20242391)
chr8 (268-333)||(20250769-20250834)
[»] chr7 (26 HSPs)
chr7 (418-730)||(44338199-44338506)
chr7 (447-639)||(44338377-44338570)
chr7 (548-730)||(46963798-46963980)
chr7 (418-639)||(15623046-15623269)
chr7 (127-333)||(46963394-46963600)
chr7 (391-580)||(15623104-15623303)
chr7 (469-639)||(15623006-15623176)
chr7 (236-333)||(21813955-21814053)
chr7 (391-490)||(15623197-15623306)
chr7 (81-197)||(44338760-44338879)
chr7 (92-181)||(3889483-3889569)
chr7 (477-540)||(21813824-21813887)
chr7 (472-547)||(46963815-46963889)
chr7 (472-548)||(11828573-11828649)
chr7 (264-320)||(46963681-46963737)
chr7 (92-165)||(3901731-3901804)
chr7 (97-190)||(26403260-26403353)
chr7 (92-181)||(3889226-3889312)
chr7 (665-730)||(6530547-6530612)
chr7 (268-333)||(44338649-44338714)
chr7 (477-521)||(11828609-11828653)
chr7 (480-520)||(24487088-24487128)
chr7 (92-181)||(3901975-3902061)
chr7 (457-545)||(21813850-21813940)
chr7 (279-321)||(24486942-24486984)
chr7 (95-140)||(15614546-15614591)
[»] chr1 (12 HSPs)
chr1 (102-540)||(15629658-15630107)
chr1 (457-632)||(15629931-15630107)
chr1 (95-216)||(9168023-9168144)
chr1 (482-548)||(19825091-19825157)
chr1 (665-730)||(2072460-2072525)
chr1 (548-615)||(15629930-15629997)
chr1 (477-521)||(19825117-19825161)
chr1 (665-730)||(2075990-2076055)
chr1 (268-385)||(3775072-3775188)
chr1 (268-331)||(12177164-12177227)
chr1 (474-548)||(2072366-2072440)
chr1 (474-548)||(2075896-2075970)
[»] chr6 (18 HSPs)
chr6 (391-730)||(21861963-21862311)
chr6 (102-381)||(9290947-9291228)
chr6 (428-672)||(13167359-13167604)
chr6 (425-639)||(21862142-21862363)
chr6 (418-535)||(28063583-28063699)
chr6 (446-604)||(28063518-28063677)
chr6 (509-639)||(21862239-21862371)
chr6 (92-189)||(18984248-18984345)
chr6 (264-333)||(22860908-22860976)
chr6 (268-333)||(22860941-22861007)
chr6 (237-289)||(28063456-28063508)
chr6 (301-386)||(22860917-22861008)
chr6 (264-333)||(22860797-22860869)
chr6 (144-201)||(10741605-10741661)
chr6 (474-514)||(10741529-10741569)
chr6 (477-544)||(13097903-13097970)
chr6 (268-333)||(22860762-22860829)
chr6 (484-521)||(13097895-13097932)
[»] chr4 (19 HSPs)
chr4 (472-730)||(16870561-16870820)
chr4 (127-301)||(16871262-16871432)
chr4 (264-547)||(16870652-16870955)
chr4 (508-578)||(54147835-54147905)
chr4 (425-509)||(54147811-54147896)
chr4 (457-541)||(54147717-54147802)
chr4 (508-632)||(54147718-54147843)
chr4 (457-513)||(54147869-54147926)
chr4 (657-725)||(16870395-16870463)
chr4 (237-289)||(54147912-54147964)
chr4 (478-545)||(42265426-42265492)
chr4 (272-333)||(24225681-24225742)
chr4 (548-604)||(54147870-54147927)
chr4 (268-333)||(16871105-16871172)
chr4 (264-333)||(16871033-16871105)
chr4 (477-521)||(24225502-24225546)
chr4 (665-721)||(54147571-54147627)
chr4 (249-333)||(24225647-24225735)
chr4 (102-147)||(7259149-7259194)
[»] chr3 (10 HSPs)
chr3 (102-294)||(50295902-50296088)
chr3 (105-313)||(46691751-46691955)
chr3 (472-644)||(46691968-46692141)
chr3 (418-548)||(46692006-46692137)
chr3 (1-73)||(50212997-50213069)
chr3 (457-570)||(42530711-42530824)
chr3 (548-640)||(42530733-42530825)
chr3 (192-333)||(42530947-42531090)
chr3 (264-464)||(42530725-42530947)
chr3 (485-521)||(50295550-50295586)
[»] chr2 (26 HSPs)
chr2 (372-613)||(1173283-1173535)
chr2 (127-333)||(8986502-8986708)
chr2 (556-730)||(8986123-8986298)
chr2 (457-639)||(1173283-1173467)
chr2 (95-203)||(32290862-32290970)
chr2 (593-730)||(38584195-38584328)
chr2 (102-278)||(9047948-9048116)
chr2 (94-201)||(38583785-38583892)
chr2 (251-364)||(32290742-32290863)
chr2 (192-327)||(1173133-1173268)
chr2 (268-333)||(38583967-38584033)
chr2 (93-170)||(20593699-20593778)
chr2 (473-547)||(8986214-8986287)
chr2 (264-357)||(38583998-38584102)
chr2 (264-320)||(8986368-8986424)
chr2 (268-364)||(38583934-38584035)
chr2 (661-721)||(1173671-1173731)
chr2 (477-521)||(38584202-38584246)
chr2 (95-141)||(1173057-1173103)
chr2 (485-547)||(1173560-1173622)
chr2 (268-333)||(32290709-32290775)
chr2 (457-548)||(38584083-38584176)
chr2 (478-548)||(38584168-38584242)
chr2 (477-521)||(38584136-38584180)
chr2 (590-644)||(1173573-1173627)
chr2 (477-547)||(1173583-1173653)
[»] scaffold0007 (1 HSPs)
scaffold0007 (94-216)||(14548-14670)
[»] scaffold0499 (1 HSPs)
scaffold0499 (484-521)||(7304-7341)
[»] scaffold0025 (1 HSPs)
scaffold0025 (493-523)||(154938-154968)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 81 - 517
Target Start/End: Complemental strand, 24137426 - 24136981
Alignment:
Q  81 agcagaacctgtgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaac 180  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  24137426 agcagaaccaatgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaccatcaccatcaaccaatcaaatagagaaccatccaaac 24137327  T
Q  181 aatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  24137326 aatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtatccaaagaatcatcaaaagtgggagaagtgcaatcagaagaat 24137227  T
Q  281 caaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaa 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  24137226 caaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgcattagaagaaccaaaagggggagaagtgcaatctattagaagaaccaa 24137127  T
Q  381 aagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg- 471  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| |||||||| | ||||     
T  24137126 aaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaattgaagaatcaaaggggga 24137027  T
Q  472 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 517  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24137026 gaagaaaccaaattgtgagaactagactcaccaaacaaccaaattg 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 425 - 733
Target Start/End: Complemental strand, 24137012 - 24136716
Alignment:
Q  425 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg-aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 523  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24137012 gtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 24136913  T
Q  524 gtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattc 623  Q
    |||||||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24136912 gtcggctcaccaaacaaccaaattgaagaatcaaaag---------aagcaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgactc 24136822  T
Q  624 acccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattga 723  Q
    ||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  24136821 acccaacaagcaaattatgagtgctttacataccaaac----aaacgaacaaaccaattgtgagcactattttgactcacccaacaaccaaacaaattga 24136726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 476 - 604
Target Start/End: Complemental strand, 24137114 - 24136986
Alignment:
Q  476 aaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaa 575  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  24137114 aaaccaaattgtgagcactcaactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaagaatcaaagggggagaagaaaccaa 24137016  T
Q  576 attgtaagcac-acgctcaccaaacaacca 604  Q
    ||||| || || |  |||||||||||||||    
T  24137015 attgtgagaactagactcaccaaacaacca 24136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 508 - 639
Target Start/End: Complemental strand, 24137021 - 24136889
Alignment:
Q  508 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccata 606  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||| || ||||||||||||||| |    
T  24137021 aaccaaattgtgagaactagactcaccaaacaaccaaattgaagaatcagaaggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaa 24136922  T
Q  607 atgtgagaactcgattcacccaacaagcaaatt 639  Q
     |||||||| |||  ||||| ||||| ||||||    
T  24136921 ttgtgagaagtcggctcaccaaacaaccaaatt 24136889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 9512116 - 9512024
Alignment:
Q  241 aaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||   |||||||||||    
T  9512116 aaagaatcatcaaaagtgggagaagtgcaatcaaaagaatcaaaagggggagaaatgcaatcaatgagaagaaccaaaacaaggagaagtgca 9512024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 11320703 - 11320803
Alignment:
Q  81 agcagaacctgtgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaac 180  Q
    ||||||||  ||| |||||| |||||||| ||||||||| ||| |||||| ||| |||| | ||||||||||||||| ||||||||||||||||| ||||    
T  11320703 agcagaactagtggagagcaacaaccaaagtgagttatcatcaaagagagggcaacaagcaccatcaccatcaaccactcaaagagagaaccatctaaac 11320802  T
Q  181 a 181  Q
    |    
T  11320803 a 11320803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 9511845 - 9511777
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 545  Q
    ||||||||||||||||||||||||||||||||||| || |||||| | ||| |||||||||||| ||||    
T  9511845 aaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 11335370 - 11335437
Alignment:
Q  456 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  11335370 aaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 542
Target Start/End: Complemental strand, 9511899 - 9511811
Alignment:
Q  456 aaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacc 542  Q
    ||||||||| ||||||||  ||||| ||||||||||| | |  ||||||||||||||||||||||||| | ||| ||||||||||||||    
T  9511899 aaagaatcaaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaacc 9511811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 11335479 - 11335543
Alignment:
Q  665 caaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    |||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||| ||||    
T  11335479 caaacaaacaaaccaattgtgagcactatcttgactca-ccaacaaccaaacaaattgaaccaaac 11335543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 11335335 - 11335423
Alignment:
Q  336 agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac 424  Q
    ||||||| ||| ||||||||||| | ||||||| ||||||| ||||||||||   ||||||||||||||||||| || | |||||||||    
T  11335335 agaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaac 11335423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 11335330 - 11335391
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag 329  Q
    |||||||||||||||| |||||||||| |  ||||||||| ||||| |||||||||||||||    
T  11335330 caatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaagggggagaag 11335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 9511981 - 9511926
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggg 323  Q
    |||| ||||||||||| | |||||||| | |||||||||||||||| |||||||||    
T  9511981 caatgagaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaagggg 9511926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 11335371 - 11335437
Alignment:
Q  549 aagaatcaaaagggg-agaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgag 613  Q
    ||||||||||||||| ||||||||||||||||| ||||  || ||||||||||||||| | ||||||    
T  11335371 aagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgag 11335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 639
Target Start/End: Complemental strand, 24137136 - 24137044
Alignment:
Q  548 gaagaatcaaaaggggaga-agaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 639  Q
    |||||| ||||||||| || | |||||||||||| ||||| |  ||||||||||||||| |||||||||||| || ||||| ||||| ||||||    
T  24137136 gaagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaacca-aatgtgagaactagactcaccaaacaaccaaatt 24137044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 418 - 730
Target Start/End: Complemental strand, 20242183 - 20241876
Alignment:
Q  418 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 516  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  20242183 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 20242085  T
Q  517 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaac 616  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20242084 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 20241985  T
Q  617 tcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaac 716  Q
    |||| ||||| |||||||||||||||||||||      ||| | ||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||    
T  20241984 tcgactcaccaaacaagcaaattatgagtgct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcacccaacaaccaaac 20241890  T
Q  717 aaattgaactaaac 730  Q
    ||||||||| ||||    
T  20241889 aaattgaaccaaac 20241876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 447 - 730
Target Start/End: Original strand, 20250913 - 20251191
Alignment:
Q  447 aaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 545  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| |||||||||| ||||||    
T  20250913 aaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 20251011  T
Q  546 ttgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagt 645  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  20251012 ttgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagt 20251111  T
Q  646 gctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    |||      ||| | ||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  20251112 gct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20251191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 447 - 639
Target Start/End: Complemental strand, 20242247 - 20242054
Alignment:
Q  447 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 544  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  20242247 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 20242149  T
Q  545 attgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 639  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||| | ||||||    
T  20242148 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaatt 20242054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 425 - 547
Target Start/End: Original strand, 20250983 - 20251105
Alignment:
Q  425 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaa 523  Q
    ||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  20250983 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaa 20251081  T
Q  524 gtcggctcaccaaacaaccaaatt 547  Q
     ||| |||||||||||| ||||||    
T  20251082 ctcgactcaccaaacaagcaaatt 20251105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 20242556 - 20242437
Alignment:
Q  81 agcagaacctgtgaagagcagcaaccaaaatgagttatcttcatagagagagc---agcaagaaacatcaccatcaaccaatcaaagagagaaccatcca 177  Q
    |||||||||  |||||||||||||||||| |||||||||||  ||||||||||   |||||||| ||  |||| ||| || ||||| |||||||||||||    
T  20242556 agcagaaccaatgaagagcagcaaccaaagtgagttatctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatcca 20242457  T
Q  178 aacaatagaaccattagaga 197  Q
    ||||| |||| || ||||||    
T  20242456 aacaaaagaatcaatagaga 20242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 20250604 - 20250723
Alignment:
Q  81 agcagaacctgtgaagagcagcaaccaaaatgagttatcttcatagagag---agcagcaagaaacatcaccatcaaccaatcaaagagagaaccatcca 177  Q
    |||||||||  |||||||||||||||||| |||||||||||  |||||||   ||||||||||| ||  |||| ||| || ||||| |||||||||||||    
T  20250604 agcagaaccaatgaagagcagcaaccaaagtgagttatctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatcca 20250703  T
Q  178 aacaatagaaccattagaga 197  Q
    ||||| |||| || ||||||    
T  20250704 aacaaaagaatcaatagaga 20250723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 20242391 - 20242326
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20242391 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 20250769 - 20250834
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  20250769 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 20250834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 418 - 730
Target Start/End: Complemental strand, 44338506 - 44338199
Alignment:
Q  418 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatt 516  Q
    |||||| |||||||||  |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |    
T  44338506 accaaatgtgagaactctactcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagt 44338408  T
Q  517 gtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaac 616  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  44338407 gtgagaactcgactcaccaaaccaccaaattgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaaatgtgagaac 44338308  T
Q  617 tcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaac 716  Q
    |||| ||||| |||||||||||||||||||||      ||| | ||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||    
T  44338307 tcgactcaccaaacaagcaaattatgagtgct-----gacccaccaaacaaacgaacaaactaattgtgagcactattttgactcacccaacaaccaaac 44338213  T
Q  717 aaattgaactaaac 730  Q
    ||||||||| ||||    
T  44338212 aaattgaaccaaac 44338199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 447 - 639
Target Start/End: Complemental strand, 44338570 - 44338377
Alignment:
Q  447 aaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 544  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||| | |||||||| ||||||||| |||||||| ||  ||||||||||||||||    
T  44338570 aaccaaattgaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 44338472  T
Q  545 attgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 639  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||| | ||||||    
T  44338471 attgaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaatt 44338377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 548 - 730
Target Start/End: Original strand, 46963798 - 46963980
Alignment:
Q  548 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgc 647  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| |    
T  46963798 gaagaataaaaaggggagaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttc 46963897  T
Q  648 tttacataccaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    || ||  ||||||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  46963898 ttgacccaccaaacaaacaaatgaacaaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 46963980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 418 - 639
Target Start/End: Original strand, 15623046 - 15623269
Alignment:
Q  418 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 515  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||| ||||||||||||||| ||||||||||||||||||     
T  15623046 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaa- 15623144  T
Q  516 tgtgagaagtcggctcaccaaacaaccaaattgaagaatc-aaaaggggagaagaaaccaaattgtaagcacac-gctcaccaaacaaccataatgtgag 613  Q
    |||||||| | | |||||||||||||||||||||||||||   | ||||||||||||| ||||||| ||||| |  |||||||||||| || ||||||||    
T  15623145 tgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaatca-aatgtgag 15623243  T
Q  614 aactcgattcacccaacaagcaaatt 639  Q
    |||| || ||||| ||||| ||||||    
T  15623244 aactagactcaccaaacaaccaaatt 15623269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 46963394 - 46963600
Alignment:
Q  127 agagagcagcaagaaacatcaccatcaaccaatcaaagag--agaaccatccaaacaatagaaccattagagagaagcagtcatacataagatccagaac 224  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||      |||||    
T  46963394 agagagcagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacata------agaac 46963487  T
Q  225 caatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa- 319  Q
    |||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||| ||||| |||||| |||||     
T  46963488 caatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaaaaggggggagaagtgcaatgcaatcggaagaatcaaaag 46963586  T
Q  320 gggggagaagtgca 333  Q
    ||||||||||||||    
T  46963587 gggggagaagtgca 46963600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 391 - 580
Target Start/End: Original strand, 15623104 - 15623303
Alignment:
Q  391 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaacc 480  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||||| | |||||||  ||||||     
T  15623104 agaaacaaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaattgaagaatcggtagggggagaagaaaca 15623203  T
Q  481 aaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaagaaaccaaattg 579  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||| | | ||||||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  15623204 aaattgtgagcactcaactcaccaaacaatcaaat-gtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaaccaaattg 15623302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 469 - 639
Target Start/End: Original strand, 15623006 - 15623176
Alignment:
Q  469 ggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatca-aaaggggagaa 567  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||  | ||||||||    
T  15623006 ggggaagaaaccgaatcgtgagcacacgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattgaagaatcagtagggggagaa 15623104  T
Q  568 gaaaccaaattgtaagcacac-gctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 639  Q
    ||||| ||||||| ||||| |  ||||||||||||||| |||||||||||| || ||||| ||||| ||||||    
T  15623105 gaaacaaaattgtgagcactcaactcaccaaacaacca-aatgtgagaactagactcaccaaacaaccaaatt 15623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 21814053 - 21813955
Alignment:
Q  236 taaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaa-ccaaaagggggagaagtgca 333  Q
    ||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||    
T  21814053 taaccaaagaatcatcaaaagtgggagaagtgcaattagaacaatcaaaagggggagaaatacaatgaatcagaagaatcaaaaagggagagaagtgca 21813955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 391 - 490
Target Start/End: Original strand, 15623197 - 15623306
Alignment:
Q  391 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaa--gggggaagaaacc 480  Q
    |||||| ||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||| ||||| ||| |  ||| |||||||||    
T  15623197 agaaacaaaattgtgagcactcaactcaccaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaagaaccagtacggggagaagaaacc 15623296  T
Q  481 aaattgtgag 490  Q
    ||||||||||    
T  15623297 aaattgtgag 15623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 44338879 - 44338760
Alignment:
Q  81 agcagaacctgtgaagagcagcaaccaaaatgagttatcttcatagagagagc---agcaagaaacatcaccatcaaccaatcaaagagagaaccatcca 177  Q
    |||||||||  |||||||||||||||||| |||||||||||  ||||||||||   |||||||| ||  |||| ||| || ||||| |||||||||||||    
T  44338879 agcagaaccaatgaagagcagcaaccaaagtgagttatctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatcca 44338780  T
Q  178 aacaatagaaccattagaga 197  Q
    ||||| |||| || ||||||    
T  44338779 aacaaaagaatcaatagaga 44338760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 3889569 - 3889483
Alignment:
Q  92 tgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaaca 181  Q
    |||||||||||||||||| ||| ||||| | |||||||||||| ||||||  ||||||||||||||| ||||||   |||||||||||||    
T  3889569 tgaagagcagcaaccaaagtgaattatcataatagagagagcaacaagaataatcaccatcaaccaaccaaaga---aaccatccaaaca 3889483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 540
Target Start/End: Complemental strand, 21813887 - 21813824
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 540  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | | | ||||||||||||    
T  21813887 aaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 547
Target Start/End: Original strand, 46963815 - 46963889
Alignment:
Q  472 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 547  Q
    ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  46963815 gaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 46963889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 472 - 548
Target Start/End: Original strand, 11828573 - 11828649
Alignment:
Q  472 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    ||||||||||||||||||| |||  |||||||||||||||||| |||||| |  || ||||||| ||||||||||||    
T  11828573 gaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattg 11828649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 46963681 - 46963737
Alignment:
Q  264 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 320  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  46963681 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 46963737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 3901804 - 3901731
Alignment:
Q  92 tgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaaga 165  Q
    ||||||||| |||||||| ||| ||||| | |||||||||||| ||||||  ||||||||||||||| ||||||    
T  3901804 tgaagagcatcaaccaaagtgaattatcataatagagagagcaacaagaataatcaccatcaaccaaccaaaga 3901731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 26403353 - 26403260
Alignment:
Q  97 agcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaacca 190  Q
    |||| |||||||| | ||||||| || ||||||||| |||||||| ||| ||||||||||| | ||| ||||||||||| |||||  |||||||    
T  26403353 agcaacaaccaaagttagttatcatcgtagagagagtagcaagaatcattaccatcaaccagttaaatagagaaccatctaaacagaagaacca 26403260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 3889312 - 3889226
Alignment:
Q  92 tgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaaca 181  Q
    ||||||| |||||||||| ||| ||||| | |||||||||||| ||||||  |||| |||||||||| ||||||   |||||||||||||    
T  3889312 tgaagagtagcaaccaaagtgaattatcataatagagagagcaacaagaataatcaacatcaaccaaccaaaga---aaccatccaaaca 3889226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 6530612 - 6530547
Alignment:
Q  665 caaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    |||||| ||||||||||||| |   |||| |||||||||||||||| |||||||||||||| ||||    
T  6530612 caaacagacaaaccaattgtgaatactatcttgactcacccaacaatcaaacaaattgaacaaaac 6530547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 44338714 - 44338649
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||||| | | ||||| || | |||||||||| ||||| |||||||||||||||||||    
T  44338714 caatcagaagaatccataaggggataagtgcaatcaatcaaaagaatcaaaagggggagaagtgca 44338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 11828609 - 11828653
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  11828609 aaccaaaatgtgagcacccgactcaccagacaaccaaattgtgag 11828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 24487088 - 24487128
Alignment:
Q  480 caaattgtgagcactcgactcaccaaacaaccaaattgtga 520  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtga 24487128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 3902061 - 3901975
Alignment:
Q  92 tgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaaca 181  Q
    |||||||||||||||||| ||| ||||| |   |||||||||| ||||||  || |||||||||||| ||||||   |||||||||||||    
T  3902061 tgaagagcagcaaccaaagtgaattatcataggagagagagcaacaagaataataaccatcaaccaaccaaaga---aaccatccaaaca 3901975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 545
Target Start/End: Complemental strand, 21813940 - 21813850
Alignment:
Q  457 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 545  Q
    |||||||| ||||||||  | ||||||||||||| | |||    ||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  21813940 aagaatcaaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaa 21813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 24486942 - 24486984
Alignment:
Q  279 atcaaaagggggagaaatacaatcaatcagaagaaccaaaagg 321  Q
    ||||||||||| |||| |||||||||||||||||| |||||||    
T  24486942 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaagg 24486984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 15614546 - 15614591
Alignment:
Q  95 agagcagcaaccaaaatgagttatcttcatagagagagcagcaaga 140  Q
    |||||| |||||||| |||||||||||| ||||||||||| |||||    
T  15614546 agagcatcaaccaaagtgagttatcttcgtagagagagcaacaaga 15614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 102 - 540
Target Start/End: Original strand, 15629658 - 15630107
Alignment:
Q  102 caaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaag 201  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |    
T  15629658 caaccaaagtgagttatcttcgcagagagagcagcaagaaccatcatcatcaaccaatcaaagagagaaccatccaaaaaatagaaccagtagagagatg 15629757  T
Q  202 cagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaa--gggggagaaataca 299  Q
    ||  |||||||||||      |||||||||| |||||||||| ||||||||||||  |||||| ||||||||||||||||||||  ||||||||| | ||    
T  15629758 caaccatacataaga------accaatagaggagtaaccaaaaaatcatcaaaagttggagaagtgcaatcagaagaatcaaaaaagggggagaagtgca 15629851  T
Q  300 at-caatcagaagaaccaaaagggggagaagtgcatt-----agaagaaccaaaagggggagaagcgcaat-caattaaaagaaccaaaagggggtagag 392  Q
    || |||||| ||||| |||| | |||||||||||| |     | |||||| |||||||||||||| ||||| |||| | ||||| || ||||||  | ||    
T  15629852 atgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcaaaagaacaaaaagggggagaagtgcaatgcaatcagaagaatcataaggggaga-ag 15629950  T
Q  393 aaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaa 483  Q
    |||||||||||||||||||| | |||||||||        ||||||| ||||||||| ||||||||||||| |||||||| |||||| ||||||||||||    
T  15629951 aaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagaattagactcactaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaa 15630050  T
Q  484 ttgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 540  Q
    ||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||    
T  15630051 ttgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 457 - 632
Target Start/End: Original strand, 15629931 - 15630107
Alignment:
Q  457 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 555  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||    
T  15629931 aagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat-gtgagaattagactcactaaacaaccaaattgaagaatc 15630029  T
Q  556 aaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaa 632  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||| |||||| ||||| |||||    
T  15630030 aaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 9168023 - 9168144
Alignment:
Q  95 agagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattag 194  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||| || ||||||||||| ||||||| |||    
T  9168023 agagcagcaaccaaagtgagttatcttcatagagagagcatcaagaaccatcaccattaaccagtcaaagagaaaatcatccaaacaaaagaaccagtag 9168122  T
Q  195 agagaagcagtcatacataaga 216  Q
    ||||||| || |||||||||||    
T  9168123 agagaagtagccatacataaga 9168144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 19825091 - 19825157
Alignment:
Q  482 aattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    |||||||||||||  ||||||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattg 19825157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 2072460 - 2072525
Alignment:
Q  665 caaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    ||||||| ||||||||| || ||| |||| ||||||||||||||||| ||||||||||||||||||    
T  2072460 caaacaatcaaaccaatggtgagccctatcttgactcacccaacaactaaacaaattgaactaaac 2072525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 15629930 - 15629997
Alignment:
Q  548 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaa 615  Q
    ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  15629930 gaagaatcataaggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca-aatgtgagaa 15629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 19825117 - 19825161
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  19825117 aaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag 19825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 2075990 - 2076055
Alignment:
Q  665 caaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    |||||||  |||||||| || ||| |||| ||||||||||||||||| ||||||||||||||||||    
T  2075990 caaacaattaaaccaatggtgagccctatcttgactcacccaacaactaaacaaattgaactaaac 2076055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 3775072 - 3775188
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaag---tgcattagaagaaccaaaagggggagaagcgcaat 364  Q
    ||||||||||||||||||| | |||||  |||||| |||||||||| ||||| |||||||||   |  || | ||||| ||||||| ||||||  |||||    
T  3775072 caatcagaagaatcaaaagagagagaa--acaatcgatcagaagaatcaaaatggggagaagcaatcaatcaaaagaatcaaaaggaggagaa--gcaat 3775167  T
Q  365 caattaaaagaaccaaaaggg 385  Q
    |||| ||||||| ||||||||    
T  3775168 caatcaaaagaatcaaaaggg 3775188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 12177164 - 12177227
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtg 331  Q
    |||||| |||||||||||||   |||| | ||||||||||||| || |||||||||||||||||    
T  12177164 caatcataagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaaaagggggagaagtg 12177227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 548
Target Start/End: Original strand, 2072366 - 2072440
Alignment:
Q  474 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||| ||||||| |||||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattg 2072440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 548
Target Start/End: Original strand, 2075896 - 2075970
Alignment:
Q  474 agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    ||||||||||||||||| ||   |||||||||||||||||| | |||| | ||| |||  |||||||||||||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattg 2075970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 3e-84; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 391 - 730
Target Start/End: Complemental strand, 21862311 - 21861963
Alignment:
Q  391 agaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg------aaga 476  Q
    |||||||||||||||||||||| | |||||||||        |||||| |||||||||||||||||||||||| ||||||||||||||||      | ||    
T  21862311 agaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagagctagactcaccaaacaaccaaattgaagaatcagaagggggggggagagga 21862212  T
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaa-gaatcaaaaggggagaagaaaccaa 575  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  21862211 aaccaaatattgagcactcgactcaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattgaacgaatcaaaaggggagaagaaaccaa 21862113  T
Q  576 attgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaa 675  Q
    ||||| |||||||||||| |||||||||| |||||||||| |||| ||||| |||||||||||| |||| |||||     || | |||||||||||||||    
T  21862112 attgtgagcacacgctcaacaaacaaccaaaatgtgagaattcgactcaccaaacaagcaaattgtgagcgcttt-----cccaccaaacaaacaaacaa 21862018  T
Q  676 accaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    ||||||||| ||  |||||||||||||| ||| ||||||| ||||||||| ||||    
T  21862017 accaattgtgagaactattttgactcactcaaaaaccaaataaattgaaccaaac 21861963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 102 - 381
Target Start/End: Original strand, 9290947 - 9291228
Alignment:
Q  102 caaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaag 201  Q
    |||||||| |||||||| ||| |||||||| || |||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||| || |||||||    
T  9290947 caaccaaagtgagttatgttcgtagagagatcaacaagaaccatcatcatcaaccaatcaaagagagaacaatccaaataatagaaccagtatagagaag 9291046  T
Q  202 cagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatc-aaaagggggagaaatacaa 300  Q
    ||  ||||||||| |      |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| | |||    
T  9291047 caaccatacataaca------accaatagagaagtaaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaaagggggagaagtgcaa 9291140  T
Q  301 t-caatcagaagaaccaaaagggggagaagtgc-----attagaagaaccaaaa-gggggagaagcgcaatcaattaaaagaaccaaa 381  Q
    | |||||| ||||| |||| | |||||||||||     || ||||||||||||| |||||||||| ||||||||| | ||||| ||||    
T  9291141 tgcaatcaaaagaatcaaaggagggagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgcaatcaatcagaagaatcaaa 9291228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 428 - 672
Target Start/End: Complemental strand, 13167604 - 13167359
Alignment:
Q  428 agaactagactcaccaaacaaccaaattaaagaatcagaaggggga--agaaaccaaattgtgagcactcgactcacca-aacaaccaaattgtgagaag 524  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||||||||||||||  |||||  |||| |||||||     
T  13167604 agaactagactcaccaaacaaccaaattgaagaatcagaagggggagaagaaaccaaactgtgagcactcgactcaccggaacaatgaaat-gtgagaat 13167506  T
Q  525 tcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattca 624  Q
    |   ||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||| ||||||| || | |||||||| |||| |||    
T  13167505 tttactcaccacacaaccaaattgaagaaccaaaaggggagaagacaccaaattgtgagcatacgctcagcaaacaa-caaagtgtgagaattcgactca 13167407  T
Q  625 cccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaa 672  Q
    || ||||||||||||  |||  ||| ||  ||||||||||||||||||    
T  13167406 ccaaacaagcaaattgcgagcacttgacccaccaaacaaacaaacaaa 13167359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 425 - 639
Target Start/End: Complemental strand, 21862363 - 21862142
Alignment:
Q  425 gtgagaactagactcaccaaacaaccaaattaaagaatcagaaggggg---aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    ||||||| ||||||||||||||||||||||| |||||||| || ||||   |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21862363 gtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgag 21862265  T
Q  522 aagtcggctcaccaaacaaccaaattgaagaatcaaaa-----ggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaa 615  Q
    |  | | |||||||||||||||||||||||||||| ||     ||||||| ||||||||||  | ||||| || ||||||||||||||| ||||||||||    
T  21862264 agctagactcaccaaacaaccaaattgaagaatcagaagggggggggagaggaaaccaaatattgagcactcgactcaccaaacaacca-aatgtgagaa 21862166  T
Q  616 ctcgattcacccaacaagcaaatt 639  Q
    || || ||||| ||||| ||||||    
T  21862165 ctagactcaccaaacaaccaaatt 21862142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 418 - 535
Target Start/End: Original strand, 28063583 - 28063699
Alignment:
Q  418 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagggggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattg 517  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||| |||||    
T  28063583 accaaatgtgagaactagactcaccaaacaaccaaattgaagaatcaaaagggagaagaaaccaaattgtgagcacctgactcaccaaacaacc-aattg 28063681  T
Q  518 tgagaagtcggctcacca 535  Q
    |||| | |||||||||||    
T  28063682 tgagcactcggctcacca 28063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 446 - 604
Target Start/End: Original strand, 28063518 - 28063677
Alignment:
Q  446 caaccaaattaaagaatcagaaggggg--aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacca 543  Q
    ||||||| | ||||||||| |||||||  |||||| ||||||| ||| | || ||| ||||||||||||||| ||||||| | | |||||||||||||||    
T  28063518 caaccaactgaaagaatcaaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaat-gtgagaactagactcaccaaacaacca 28063616  T
Q  544 aattgaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaacca 604  Q
    |||||||||||||||| |||||||||||||||||||| |||||  | |||||||||||||||    
T  28063617 aattgaagaatcaaaa-gggagaagaaaccaaattgtgagcacctgactcaccaaacaacca 28063677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 509 - 639
Target Start/End: Complemental strand, 21862371 - 21862239
Alignment:
Q  509 accaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaa--ggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaaccat 605  Q
    |||||| |||||||| | | |||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| || |||||||||||||||     
T  21862371 accaaagtgtgagaattagactcaccaaacaaccaaattgaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca- 21862273  T
Q  606 aatgtgagaactcgattcacccaacaagcaaatt 639  Q
    ||||||||| || || ||||| ||||| ||||||    
T  21862272 aatgtgagagctagactcaccaaacaaccaaatt 21862239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 18984345 - 18984248
Alignment:
Q  92 tgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaacc 189  Q
    |||||||||||||||||| |||| || |||| |||||||||||||||||| ||  |||| |||||| ||||| |||||||||||||||||| ||||||    
T  18984345 tgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaacc 18984248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 22860976 - 22860908
Alignment:
Q  264 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||    
T  22860976 aatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaa-ggggagaagtgca 22860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 22861007 - 22860941
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  22861007 caatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgca 22860941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 28063456 - 28063508
Alignment:
Q  237 aaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 289  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28063456 aaccaaagaatcatcaaaagtgggagaaatgcaatcagaaggatcaaaagggg 28063508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 22861008 - 22860917
Alignment:
Q  301 tcaatcagaagaaccaaaagggggagaagtgcatt------agaagaaccaaaagggggagaagcgcaatcaattaaaagaaccaaaagggg 386  Q
    |||||||||||||||||||||||||||| |||| |      ||||||||||||||||||||||  |||||||||   |||||||||||||||    
T  22861008 tcaatcagaagaaccaaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaaatgcaatcaatcggaagaaccaaaagggg 22860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 22860869 - 22860797
Alignment:
Q  264 aatgcaatcagaagaatcaaaagggggagaaa--tacaatcaatcagaagaaccaaaag-ggggagaagtgca 333  Q
    |||| ||||||||||||||||| ||||||| |  | ||||||||||||||||||||||| |||||||||||||    
T  22860869 aatggaatcagaagaatcaaaaaggggagagaagtgcaatcaatcagaagaaccaaaaggggggagaagtgca 22860797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 10741661 - 10741605
Alignment:
Q  144 atcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaag 201  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||  |||||||||    
T  10741661 atcaccatcaaccaatcaaaaagagaatcat-caaacaatagaaccaacagagagaag 10741605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 10741569 - 10741529
Alignment:
Q  474 agaaaccaaattgtgagcactcgactcaccaaacaaccaaa 514  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  10741569 agaaaccaaattgtgagtactcgactcaccgaacaaccaaa 10741529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 544
Target Start/End: Complemental strand, 13097970 - 13097903
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 544  Q
    |||||||||||||||||| | |||| ||||||| ||| ||||||| | ||| |||| |||||||||||    
T  13097970 aaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaa 13097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 22860829 - 22860762
Alignment:
Q  268 caatcagaagaatcaaaaggggg-agaaatacaat-caatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||| |||||||||| |||| | |||| |||||||||||| |||||||| ||||||||||    
T  22860829 caatcagaagaaccaaaaggggggagaagtgcaatgcaatcagaagaatcaaaagggagagaagtgca 22860762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 13097932 - 13097895
Alignment:
Q  484 ttgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  13097932 ttgtgagcactcgactcatcaaacaaccaatttgtgag 13097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 2e-76; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 472 - 730
Target Start/End: Complemental strand, 16870820 - 16870561
Alignment:
Q  472 gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat--caaaaggggagaaga 569  Q
    |||||||||||||| |||||||||||||||| |||||||||||| || |||| | | ||||| || |||||||||||||||||  |||||||||||||||    
T  16870820 gaagaaaccaaattatgagcactcgactcacgaaacaaccaaat-gtaagaacttgactcactaatcaaccaaattgaagaatatcaaaaggggagaaga 16870722  T
Q  570 aaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaac 669  Q
    ||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| ||| ||  ||||||||||||||     
T  16870721 aaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaaat 16870622  T
Q  670 aaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
     |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  16870621 gaacaaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 16870561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 127 - 301
Target Start/End: Complemental strand, 16871432 - 16871262
Alignment:
Q  127 agagagcagcaagaaacatcaccatcaaccaatcaaagagaga--accatccaaacaatagaaccattagagagaagcagtcatacataagatccagaac 224  Q
    ||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||      |||||    
T  16871432 agagaacagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacata------agaac 16871339  T
Q  225 caatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatc-aaaagggggagaaatacaat 301  Q
    |||||||| || |||||||||||||||||||| ||||||| |||||| ||||||||| |||| |||||||| ||||||    
T  16871338 caatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaattagaagaatcaaaaaaggggagaagtacaat 16871262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 264 - 547
Target Start/End: Complemental strand, 16870955 - 16870652
Alignment:
Q  264 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgc----------attagaagaaccaaaagggg 352  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||  ||||||||| |          ||  |||||||||| | |||    
T  16870955 aatgcaatcagaagaaccaataggtggagaaatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatcggaagaaccaaca-ggg 16870857  T
Q  353 gagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattc--------accaaacgtgagaactagactcaccaa 444  Q
    |||||| ||||||||| | |||||  |||| ||||   |||||||||||| ||||||||| | ||        |||||| || |||||| ||||||| ||    
T  16870856 gagaagtgcaatcaatgagaagaataaaaaaggggagaagaaaccaaattatgagcactcgactcacgaaacaaccaaatgtaagaacttgactcactaa 16870757  T
Q  445 acaaccaaattaaaga--atcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 541  Q
     |||||||||| ||||  |||| |||||| ||||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| ||||||||||||     
T  16870756 tcaaccaaattgaagaatatcaaaaggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaag 16870658  T
Q  542 caaatt 547  Q
    ||||||    
T  16870657 caaatt 16870652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 508 - 578
Target Start/End: Complemental strand, 54147905 - 54147835
Alignment:
Q  508 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaatt 578  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54147905 aaccaaattgtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaatt 54147835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 509
Target Start/End: Complemental strand, 54147896 - 54147811
Alignment:
Q  425 gtgagaactagactcaccaaacaaccaaattaaagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaa 509  Q
    ||||| ||| |||||||||||||||||| || |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||    
T  54147896 gtgagcactcgactcaccaaacaaccaacttgaagaatcaaaaggggagaagaaaccaaattatgagcactcgacccaccaaacaa 54147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 457 - 541
Target Start/End: Complemental strand, 54147802 - 54147717
Alignment:
Q  457 aagaatcagaagggggaa-gaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaac 541  Q
    |||||||| ||||||||| |||||||||||||||||||   |||||||||||||||||| |||||||| | | |||||||||||||    
T  54147802 aagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaac 54147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 508 - 632
Target Start/End: Complemental strand, 54147843 - 54147718
Alignment:
Q  508 aaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggggagaagaaaccaaattgtaagca-cacgctcaccaaacaaccata 606  Q
    ||||||||| |||| | ||| | |||||||||| |||   ||||||||||||||||  ||||||||||||||| |||| ||  ||||||||||||||| |    
T  54147843 aaccaaattatgagcactcgacccaccaaacaatcaatcagaagaatcaaaagggggaaagaaaccaaattgtgagcaccaaactcaccaaacaaccaaa 54147744  T
Q  607 atgtgagaactcgattcacccaacaa 632  Q
    ||||||||||| || ||||| |||||    
T  54147743 atgtgagaactagactcaccaaacaa 54147718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 457 - 513
Target Start/End: Complemental strand, 54147926 - 54147869
Alignment:
Q  457 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 513  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54147926 aagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 657 - 725
Target Start/End: Complemental strand, 16870463 - 16870395
Alignment:
Q  657 caaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaac 725  Q
    ||||||||||||| |||||||| | ||| ||| ||||||||||||||| ||||||||||||||||||||    
T  16870463 caaacaaacaaacgaacaaacctactgtgagcactattttgactcaccaaacaaccaaacaaattgaac 16870395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 54147964 - 54147912
Alignment:
Q  237 aaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggg 289  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  54147964 aaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaagggg 54147912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 545
Target Start/End: Complemental strand, 42265492 - 42265426
Alignment:
Q  478 accaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 545  Q
    ||||||||||||||||| || ||||||||||||||||||||||| | ||| |||||||||||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaa 42265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 24225742 - 24225681
Alignment:
Q  272 cagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| || | |||||||    
T  24225742 cagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgca 24225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 604
Target Start/End: Complemental strand, 54147927 - 54147870
Alignment:
Q  548 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacg-ctcaccaaacaacca 604  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  54147927 gaagaatcaaaaggggagaagaaaccaaattgtgagcactcgactcaccaaacaacca 54147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 16871172 - 16871105
Alignment:
Q  268 caatcagaagaatcaaaa--gggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||| |||||||||  ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  16871172 caatcagacgaatcaaaaaagggggagaagtgcaatcaatcagaagaaccaaaagtgggagaagtgca 16871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 16871105 - 16871033
Alignment:
Q  264 aatgcaatcagaagaatcaaaag-ggggagaaatacaat-caatcagaagaaccaaaa-gggggagaagtgca 333  Q
    ||||||||||||||||||||||| |||||||| | |||| |||||||||||| ||||| ||||||||||||||    
T  16871105 aatgcaatcagaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggggagaagtgca 16871033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 521
Target Start/End: Complemental strand, 24225546 - 24225502
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  24225546 aaccaaattgtaagcactcgattcaccaaacaaccaaattgtgag 24225502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 721
Target Start/End: Complemental strand, 54147627 - 54147571
Alignment:
Q  665 caaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaatt 721  Q
    |||||||||||||||||||| ||  |||| |||||||||| ||||||||||||||||    
T  54147627 caaacaaacaaaccaattgtgaggactatcttgactcacctaacaaccaaacaaatt 54147571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 24225735 - 24225647
Alignment:
Q  249 atcaaaagcgggagaaatgcaatca----gaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||| ||||||||||||||||    ||||||||||||| || | || | |||| ||||||||||| ||||| |||||||||||||    
T  24225735 atcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaaaggggagaagtgca 24225647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 7259149 - 7259194
Alignment:
Q  102 caaccaaaatgagttatcttcatagagagagcagcaagaaacatca 147  Q
    |||||||||||||||||| ||  ||||||||||||||||| |||||    
T  7259149 caaccaaaatgagttatcatcgaagagagagcagcaagaaccatca 7259194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 50296088 - 50295902
Alignment:
Q  102 caaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaag 201  Q
    |||||||| | |||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  50296088 caaccaaacttagttatcttcgtagagagagcagcaaaaaccatcatcatcaaccaatcaaagagagaaccatccaaacaatagaaccagtatagagaag 50295989  T
Q  202 cagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaa 294  Q
    ||| ||||||||      ||||||||||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  50295988 cagccatacata------agaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaagagggagaa 50295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 105 - 313
Target Start/End: Original strand, 46691751 - 46691955
Alignment:
Q  105 ccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaagcag 204  Q
    ||||| |||||||||||  ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||  |    
T  46691751 ccaaagtgagttatctttgtagagagagcagcaataaccatcaacatcaaccaatcaaatagagaaccatccaaacaatagaaccaatagagagaag--g 46691848  T
Q  205 tcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaagggggagaaatacaat-ca 303  Q
    |||||||||| |   ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| | || | |||| ||    
T  46691849 tcatacataata---agaaccaatagaggagtaaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaattaaaaggggaaaaagtgcaatgca 46691945  T
Q  304 atcagaagaa 313  Q
    ||||||||||    
T  46691946 atcagaagaa 46691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 472 - 644
Target Start/End: Original strand, 46691968 - 46692141
Alignment:
Q  472 gaagaaaccaaattgtgagcactcgactcacc-aaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaaggg-gagaaga 569  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||||| |||||||    
T  46691968 gaagaaaccaaattgtgaacactcgactcaccaaaacaaccaaa-tgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaaga 46692066  T
Q  570 aaccaaattgtaagcacacg-ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgag 644  Q
    ||||||||||| ||||| || ||||||||||||| | |||||||||| | || ||||| ||||| |||||| ||||    
T  46692067 aaccaaattgtgagcactcgactcaccaaacaacta-aatgtgagaattagactcaccaaacaaccaaattgtgag 46692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 418 - 548
Target Start/End: Original strand, 46692006 - 46692137
Alignment:
Q  418 accaaacgtgagaactagactcaccaaacaaccaaattaaagaatcagaagg--gggaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 515  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||| ||||  | ||||||||||||||||||||||||||||||||||||||| |||     
T  46692006 accaaatgtgagaactagactcaccaaaccaccaaattgaagaatcaaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaactaaa- 46692104  T
Q  516 tgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    |||||||| | | ||||||||||||||||||||    
T  46692105 tgtgagaattagactcaccaaacaaccaaattg 46692137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 50212997 - 50213069
Alignment:
Q  1 gaagtgtacctttggaatgtttggtttgccacacgttccatttcgttagaatctagctctggcacgtgttgca 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50212997 gaagtgtacctttggaatgtttggtttgccacacgttccatttcgttagaatctagctctggcacgtgttgca 50213069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 457 - 570
Target Start/End: Complemental strand, 42530824 - 42530711
Alignment:
Q  457 aagaatcagaagggg-gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatc 555  Q
    |||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||    
T  42530824 aagaatcaaaaggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaattaaagaatc 42530726  T
Q  556 aaaaggggagaagaa 570  Q
    |||| ||||||||||    
T  42530725 aaaaagggagaagaa 42530711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 548 - 640
Target Start/End: Complemental strand, 42530825 - 42530733
Alignment:
Q  548 gaagaatcaaaaggggagaagaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatta 640  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||    
T  42530825 gaagaatcaaaaggggagaagaaaccaaattgtgagcacacgctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatta 42530733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 42531090 - 42530947
Alignment:
Q  192 tagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaag----- 286  Q
    ||||||||||||||||||||||| |      ||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||         
T  42531090 tagagagaagcagtcatacataaaa------accaatataggagtaaccaaagaatcattaaaagtgggagaagtgcaatcagaagaatcaaaagggggg 42530997  T
Q  287 --ggggagaaatacaatcaatcagaagaaccaaaag-ggggagaagtgca 333  Q
      |||| ||||| |||||||||||||||||| |||| || ||||||||||    
T  42530996 gtggggggaaatgcaatcaatcagaagaaccgaaagcggagagaagtgca 42530947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 264 - 464
Target Start/End: Complemental strand, 42530947 - 42530725
Alignment:
Q  264 aatgcaatcagaagaatcaaaaggggg-agaaatacaatcaatcagaagaaccaaaagggggagaag---------tgc-----attagaagaaccaaaa 348  Q
    ||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||| ||||||||         |||     || ||||||| |||||    
T  42530947 aatgcaatctgaataatcaaaaggggggagaagtgcaatcaatcagaagaaccaaaagagggagaagtaagtgaaatgcaatcaatcagaagaatcaaaa 42530848  T
Q  349 gggggagaagcgcaatcaattaaaagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac---------gtgagaactagactc 439  Q
    |||| ||||| ||||||||| | ||||| |||||||||  | |||||||||||||||||||| |   |||||||||         ||||||||| |||||    
T  42530847 ggggaagaagtgcaatcaatcagaagaatcaaaaggggaga-agaaaccaaattgtgagcacac-gctcaccaaacaaccaaagtgtgagaactcgactc 42530750  T
Q  440 accaaacaaccaaattaaagaatca 464  Q
    |||||||||||||||||||||||||    
T  42530749 accaaacaaccaaattaaagaatca 42530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 50295586 - 50295550
Alignment:
Q  485 tgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    |||||||||||||||||| ||||||||||||||||||    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgag 50295550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 5e-55; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 372 - 613
Target Start/End: Original strand, 1173283 - 1173535
Alignment:
Q  372 aagaaccaaaagggggtagagaaaccaaattgtgagcactcaattcaccaaac--------gtgagaactagactcaccaaacaaccaaattaaagaatc 463  Q
    ||||| ||||||||||   |||||||||||||||||||||| | |||| ||||        ||||||||||||||||||||||||||||||| || ||||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaatgtgagaactagactcaccaaacaaccaaattgaataatc 1173382  T
Q  464 agaagggg--gaagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaatcaaaagg 561  Q
    | ||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||    
T  1173383 aaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaaccaaattgaagaatcaaaagg 1173481  T
Q  562 g-gagaagaaaccaaattgtaagcac-acgctcaccaaacaaccataatgtgag 613  Q
    | |||||||||||||||||| ||||| |  ||||||||||||||| | ||||||    
T  1173482 gcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgag 1173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 127 - 333
Target Start/End: Complemental strand, 8986708 - 8986502
Alignment:
Q  127 agagagcagcaagaaacatcaccatcaaccaatcaaagagaga--accatccaaacaatagaaccattagagagaagcagtcatacataagatccagaac 224  Q
    ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||      |||||    
T  8986708 agagagcagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacata------agaac 8986615  T
Q  225 caatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaagaatcaaaa---gggggagaaatacaat-caatcagaagaaccaaaa- 319  Q
    |||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||| |||||||||||| |||||     
T  8986614 caatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaatcagaagaatcaaaaaaggggggagaagtgcaatgcaatcagaagaatcaaaag 8986516  T
Q  320 gggggagaagtgca 333  Q
    ||||||||||||||    
T  8986515 gggggagaagtgca 8986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 556 - 730
Target Start/End: Complemental strand, 8986298 - 8986123
Alignment:
Q  556 aaaaggggagaa-gaaaccaaattgtaagcacacgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacat 654  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||| ||| ||      
T  8986298 aaaaggggagaaagaaaccaaattgtgagcacatgctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgaccc 8986199  T
Q  655 accaaacaaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    ||||||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  8986198 accaaacaaacaaatgaacaaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 8986123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 457 - 639
Target Start/End: Original strand, 1173283 - 1173467
Alignment:
Q  457 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattgaagaat 554  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||| |||||| |||| |||||||| | | |||||||||||||||||||||| |||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaa-tgtgagaactagactcaccaaacaaccaaattgaataat 1173381  T
Q  555 caaaa-ggggagaagaaaccaaattgtaagcac-acgctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaatt 639  Q
    ||||| |||||||||||||||||||||  |||| |  ||||||||||||||| |||||||||| | || ||||| ||||| ||||||    
T  1173382 caaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaacca-aatgtgagaattagactcaccaaacaaccaaatt 1173467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 32290970 - 32290862
Alignment:
Q  95 agagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattag 194  Q
    ||||||||||| ||| |||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||    
T  32290970 agagcagcaactaaagtgagttattttcgtagagagagcagcaagaatcatcatcatcaaccaatcaaagagagaaccatccaaacaaaagaaccagtag 32290871  T
Q  195 agagaagca 203  Q
    |||||||||    
T  32290870 agagaagca 32290862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 593 - 730
Target Start/End: Original strand, 38584195 - 38584328
Alignment:
Q  593 accaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgagtgctttacataccaaacaaacaaacaaacaaaccaattgtaagcgcta 692  Q
    |||||||||||| |||||||| |||||| ||||| |||||||||||| ||||||||| ||  ||||||||||| ||||||| ||   ||||| ||| |||    
T  38584195 accaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaacgaacaaaccaa---attgtgagcacta 38584290  T
Q  693 ttttgactcacccaacaaccaaacaaattgaactaaac 730  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  38584291 ttttgactcacccaacaaccaaacaaattgaaccaaac 38584328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 9047948 - 9048116
Alignment:
Q  102 caaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccattagagagaag 201  Q
    |||||||| |||||||||||| |||||  |||||||  || ||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||    
T  9047948 caaccaaagtgagttatcttcgtagag--agcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagaaaag 9048045  T
Q  202 cagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaaga 278  Q
     |||||||||||      ||||  ||||||| |||||||||| ||||||||||||  | |||| |||||||| ||||    
T  9048046 gagtcatacata------agaattaatagaggagtaaccaaaaaatcatcaaaagtagtagaactgcaatcaaaaga 9048116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 38583785 - 38583892
Alignment:
Q  94 aagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccatta 193  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||| ||  |||| ||||||||| || ||| |||||||||||||| ||||| | ||    
T  38583785 aagagcagcaaccaaagtgagttatcttcacagagagagcagcaagaaccactaccaccaaccaatccaatagaaaaccatccaaacaaaagaacaagta 38583884  T
Q  194 gagagaag 201  Q
    ||||||||    
T  38583885 gagagaag 38583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 32290863 - 32290742
Alignment:
Q  251 caaaagcgggagaaatgcaatcagaagaatcaaaagggg-gagaaatacaatcaatcagaagaaccaaaa-gggggagaagtgc------attagaagaa 342  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| | |||||||||||      || |||||||    
T  32290863 caaaagtgggagaagtgcaatcagaagaatcaaaaggggagagaaatgcaatcaatcagaagaactaaaatgagggagaagtgcaatacaatcagaagaa 32290764  T
Q  343 ccaaaagggggagaagcgcaat 364  Q
    |||||||||||||||| |||||    
T  32290763 ccaaaagggggagaagtgcaat 32290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 327
Target Start/End: Original strand, 1173133 - 1173268
Alignment:
Q  192 tagagagaagcagtcatacataagatccagaaccaatagagtagtaaccaaagaatcatcaaaagcgggagaaatgcaatcagaaga-----atcaaaag 286  Q
    |||||||||||||||||||| ||||      |||||||||| || |||||||||||||||||||| || |||| |||||||||||||     ||||||||    
T  1173133 tagagagaagcagtcatacaaaaga------accaatagaggagcaaccaaagaatcatcaaaagtggaagaagtgcaatcagaagaagaatatcaaaag 1173226  T
Q  287 -ggggagaaatacaatcaatcagaagaaccaaaagggggaga 327  Q
     |||||| ||| |||||||||||||||| ||| || ||||||    
T  1173227 tggggagcaatgcaatcaatcagaagaatcaacagagggaga 1173268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 38583967 - 38584033
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 333  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  38583967 caatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgca 38584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 20593699 - 20593778
Alignment:
Q  93 gaagagcagcaaccaaaatgagttatcttcatagagagag--cagcaagaaacatcaccatcaaccaatcaaagagagaa 170  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||| ||||| |||||||||||||||  |||||||||||    
T  20593699 gaagagcagcaaccaaagtgagttatcatcatagagagagaccagtaagaaccatcaccatcaaccagccaaagagagaa 20593778  T

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Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 473 - 547
Target Start/End: Complemental strand, 8986287 - 8986214
Alignment:
Q  473 aagaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 547  Q
    |||||||||||||||||||||  | ||||||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  8986287 aagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaatt 8986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 38583998 - 38584102
Alignment:
Q  264 aatgcaatcagaagaatcaaaagggggagaa-----atacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggg 352  Q
    |||||||||||||||||||||||||||||||     || |||||| |||||| || ||||||||||||||||||      |||||||||| |||||||||    
T  38583998 aatgcaatcagaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggg 38584097  T
Q  353 gagaa 357  Q
    |||||    
T  38584098 gagaa 38584102  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 8986424 - 8986368
Alignment:
Q  264 aatgcaatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaag 320  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  8986424 aatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaag 8986368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 38583934 - 38584035
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaatcaatcagaagaaccaaaagggggagaagtgc------attagaagaaccaaaagggggagaagcgc 361  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||| |||||||| ||||| |||      || ||||||| ||||||||||||||| ||    
T  38583934 caatcagaagaatcaaa-gggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgc 38584032  T
Q  362 aat 364  Q
    |||    
T  38584033 aat 38584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 661 - 721
Target Start/End: Original strand, 1173671 - 1173731
Alignment:
Q  661 caaacaaacaaacaaaccaattgtaagcgctattttgactcacccaacaaccaaacaaatt 721  Q
    |||||||||||||||||||||| | ||  |||| |||||||||| ||||||||||||||||    
T  1173671 caaacaaacaaacaaaccaattttgagaactatcttgactcacctaacaaccaaacaaatt 1173731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 38584202 - 38584246
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  38584202 aaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgag 38584246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 1173057 - 1173103
Alignment:
Q  95 agagcagcaaccaaaatgagttatcttcatagagagagcagcaagaa 141  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||    
T  1173057 agagcagcaatcaaagtgagttatcttcgtagagagagcagcaagaa 1173103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 547
Target Start/End: Original strand, 1173560 - 1173622
Alignment:
Q  485 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 547  Q
    |||||||||| ||||||||||||||||||| | |||| | ||| |||||||||||| ||||||    
T  1173560 tgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaatt 1173622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 32290775 - 32290709
Alignment:
Q  268 caatcagaagaatcaaaagggggagaaatacaat-caatcagaagaaccaaaagggggagaagtgca 333  Q
    |||||||||||| |||||||||||||| | |||| |||||||||| |||||||  ||||||||||||    
T  32290775 caatcagaagaaccaaaagggggagaagtgcaatgcaatcagaaggaccaaaaatgggagaagtgca 32290709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 548
Target Start/End: Original strand, 38584083 - 38584176
Alignment:
Q  457 aagaatcagaaggggga--agaaaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    |||||||| ||||||||  | ||| ||||||||||||| |  ||||||||||||||||||||||||| | |   |||||||||| |||||||||    
T  38584083 aagaatcaaaagggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattg 38584176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 548
Target Start/End: Original strand, 38584168 - 38584242
Alignment:
Q  478 accaaattgtgagcactcgactcacca----aacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 548  Q
    ||||||||||||||||| |||||||||    |||||||||| |||||| | ||| |||||||||||| |||||||    
T  38584168 accaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattg 38584242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 38584136 - 38584180
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  38584136 aaccaaattgtgagcacttaactcaccaaactaccaaattgtgag 38584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 644
Target Start/End: Original strand, 1173573 - 1173627
Alignment:
Q  590 ctcaccaaacaaccataatgtgagaactcgattcacccaacaagcaaattatgag 644  Q
    ||||||||||||||| ||| |||| |||||| ||||| ||||| |||||||||||    
T  1173573 ctcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgag 1173627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 547
Target Start/End: Original strand, 1173583 - 1173653
Alignment:
Q  477 aaccaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaatt 547  Q
    ||||||| | |||| |||||||||||||||||| |||||| |||| | ||| | |||||||||| ||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaatt 1173653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 14548 - 14670
Alignment:
Q  94 aagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaacatcaccatcaaccaatcaaagagagaaccatccaaacaatagaaccatta 193  Q
    |||||||||||||||| |||| || |||| |||||||||||||||||| ||  |||| |||||| ||||| |||||||||||||||||| ||||||  ||    
T  14548 aagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggta 14647  T
Q  194 gagagaagcagtcatacataaga 216  Q
    |||| ||  || |||||||||||    
T  14648 gagataactagccatacataaga 14670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 521
Target Start/End: Original strand, 7304 - 7341
Alignment:
Q  484 ttgtgagcactcgactcaccaaacaaccaaattgtgag 521  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7304 ttgtgagcactcgactcaccaaacaaccaatttgtgag 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 493 - 523
Target Start/End: Original strand, 154938 - 154968
Alignment:
Q  493 ctcgactcaccaaacaaccaaattgtgagaa 523  Q
    |||||||||||||||||||||||||||||||    
T  154938 ctcgactcaccaaacaaccaaattgtgagaa 154968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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