View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9735_4 (Length: 560)
Name: NF9735_4
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9735_4 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 233 - 546
Target Start/End: Complemental strand, 24135571 - 24135258
Alignment:
| Q |
233 |
ttaataagaaggcacgaagactaggaaaatcatgaacccatgtttcaaacaaaattaaaacacaaaatttgtctaatgagtatatgtactcaccaatacc |
332 |
Q |
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| T |
24135571 |
ttaataagaaggcacgaagactaggaaaatcatgaacccatgtttcaaacaaaattaaaacacaaaatttgtctaatgagtatatgtactcaccaatacc |
24135472 |
T |
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| Q |
333 |
caaatccatgcgagaactctaatccaaaacaaaataaaattgtgcaacattgactgaccaaccaatgagaatcaaataaacatggagccggcttcattct |
432 |
Q |
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| T |
24135471 |
caaatccatgcgagaactctaatccaaaaaaaaacaaaattgtgcaacattgactgaccaaccaatgagaatcaaataaacatggagccggcttcattct |
24135372 |
T |
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| Q |
433 |
tcaaattgcacaatttcaattccaaaagagataccttagatcgggattcaacaaaagnnnnnnnnnngttttaaaccaatcatcaaagcaccaatattgc |
532 |
Q |
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| T |
24135371 |
ccaaattgcaaaatttcaattccaaaagagataccttagatcgggattcaacaaaagttttttttttgttttaaaccaatcatcaaagcaccaatattgc |
24135272 |
T |
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| Q |
533 |
aaattactaaatac |
546 |
Q |
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| T |
24135271 |
aaattagtaaatac |
24135258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24136578 - 24136485
Alignment:
| Q |
1 |
aacctacaaatagataactagactcaaataaataaactaaaaaatgtccaaatgcaaaactcaaccatagaacctggaatgaaacacaaatgaccttt |
98 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
24136578 |
aacctacaaatagagaactagactcaaataaataaactaaaaactgtccaaatgcaaaact----catggaacctgaaatgaaacacaaatgaccttt |
24136485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 24135659 - 24135607
Alignment:
| Q |
93 |
acctttcaatccaattttaatgaaaatcccaaaagcaaccatgattgcagcaa |
145 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24135659 |
acctttcaatccaattttaatgaaaatctcaaaagcaaccatgattgcagcaa |
24135607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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