View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9735_5 (Length: 527)
Name: NF9735_5
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9735_5 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 114 - 499
Target Start/End: Complemental strand, 40843812 - 40843428
Alignment:
| Q |
114 |
gaggcaaaaccacttggattaatgtgcaaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaat |
213 |
Q |
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| T |
40843812 |
gaggcaacaccacttggatta-tgtgcaaaaattagtattgtggaatccgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaat |
40843714 |
T |
|
| Q |
214 |
tctcaaagcctttcctcctggctctgtttttgaagatctccctcttatacctacttttgttaacattcatggttttgattatgacctgtgacagatgact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843713 |
tctcaaagcctttcctcctggctctgtttttgaagatctccctcttatacctacttttgttaacattcatggttttgattatgacctgtgacagatgact |
40843614 |
T |
|
| Q |
314 |
acaagctgattcgatgtttttgtttatgtaacgatgttatgaagcacggtccgaatgatgtgactttatggcaggtttatagcctaaaaagtaattattg |
413 |
Q |
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| T |
40843613 |
acaagctgattcgatgtttttgtttatgtaacgatgttatgaagcacggtccgaatgatgtgactttatggcaggtttatagcctaaaaagtaattattg |
40843514 |
T |
|
| Q |
414 |
gagggatcttcaagttgaaatgccaaatcattcacagtatgacgggtggcaagacaccggctatgcagtgcaccttcattggatgt |
499 |
Q |
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| T |
40843513 |
gagggatcttcaagttgaaatgccaaatcattcacggtatgacgggtggcaagacaccggttatgcagtacaccttcatgggatgt |
40843428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 66 - 338
Target Start/End: Original strand, 46502260 - 46502530
Alignment:
| Q |
66 |
ctggttctgttgttaatggcatactttgtctctgtcaaggcaatggaagaggcaaaaccacttggattaatgtgcaaaaattagtattgtggaatctgta |
165 |
Q |
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| T |
46502260 |
ctggttctattgttaatggcatactttgtctctgtcaaggcaatggaagaggtgacaccacttggatt---gcacaaaaagttgtattgtggaacccatc |
46502356 |
T |
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| Q |
166 |
tacagaggaattcaaagtcattcctagtggctcttttgaacgtacaattctcaaagcctttcctcctggctctgtttttgaagatctccctcttatacct |
265 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| | ||||||| |||||||||||||||||| |||||||||| ||||| ||| |||| | |
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| T |
46502357 |
tacagaggaattcaaagtcattcctaatggttcttttgaacatgcaattctgaaagcctttcctcctggcactgtttttgaggatcttcctgttattaat |
46502456 |
T |
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| Q |
266 |
acttttgttaacattcatggttttgattatga-cctgtgacagatgactacaagctgattcgatgtttttgttt |
338 |
Q |
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| T |
46502457 |
actattgttaacattcatggttttggttatgacccagtgtccgatgactacaagctgattcgatgtttttgttt |
46502530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 140 - 444
Target Start/End: Complemental strand, 4041871 - 4041563
Alignment:
| Q |
140 |
caaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaattctcaaagcctttcctcctggctctg |
239 |
Q |
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|||||| | ||||||||||||| | ||| || |||||||| | |||||||| |||||| ||||| | |||||||||||||| ||||| ||||| |||| |
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| T |
4041871 |
caaaaagttgtattgtggaatccatctacggatgaattcaaggccattcctaatggctcctttgagcacacaattctcaaagcatttccccctggatctg |
4041772 |
T |
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| Q |
240 |
tttttgaagatctccctcttatacctacttttgttaacattcatggttttgattatga-cctgtgacagatgactacaagctgattcgatgtttttgttt |
338 |
Q |
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||||||||||||| ||| |||| |||||| |||||||||| || |||| |||||| ||||| ||||||||||||||| | ||||||| ||||||||| |
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| T |
4041771 |
tttttgaagatctacctacaatacatactttcattaacattcacgggtttggttatgatcctgtcacagatgactacaagttaattcgatatttttgttt |
4041672 |
T |
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| Q |
339 |
atgtaacgatgttatgaag---cacggtccgaatgatgtgactttatggcaggtttatagcctaaaaagtaattattggagggatcttcaagttgaaatg |
435 |
Q |
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| T |
4041671 |
ctttgaagatatcgaggaggatgatgatccaagtgatgagtctgtatggcagatatatagcctaaaaagtaacagttggagggatcttgaagttgaaatg |
4041572 |
T |
|
| Q |
436 |
ccaaatcat |
444 |
Q |
| |
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||||||||| |
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| T |
4041571 |
ccaaatcat |
4041563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 4041953 - 4041915
Alignment:
| Q |
67 |
tggttctgttgttaatggcatactttgtctctgtcaagg |
105 |
Q |
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| T |
4041953 |
tggttccgttgttaatggcatactttgtctttgtcaagg |
4041915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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