View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9735_7 (Length: 466)

Name: NF9735_7
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9735_7
NF9735_7
[»] chr4 (9 HSPs)
chr4 (18-446)||(36978694-36979122)
chr4 (220-374)||(36979752-36979906)
chr4 (237-303)||(36984396-36984462)
chr4 (272-446)||(36996413-36996587)
chr4 (256-446)||(36980522-36980712)
chr4 (245-327)||(37000387-37000469)
chr4 (335-446)||(36995772-36995883)
chr4 (272-376)||(36986225-36986329)
chr4 (141-203)||(36984318-36984380)


Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 36978694 - 36979122
Alignment:
Q  18 ggacatcatcacagactctacatattgatttcgaattatacgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt 117  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36978694 ggacaacatcacagactctacatattgattttgaattatgcgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt 36978793  T
Q  118 taatcctttcttaagaatattatctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttggactgatagatgttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||     
T  36978794 taatcctttcttaagaatattatctccactcttaacattggaattgaacttattgctaacatccttctgtttcacctcctctttggactgatagatgttc 36978893  T
Q  218 agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36978894 agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg 36978993  T
Q  318 atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36978994 atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt 36979093  T
Q  418 tcctttagtttctactgtggctgatgatg 446  Q
    |||||||||||||||||||||||||||||    
T  36979094 tcctttagtttctactgtggctgatgatg 36979122  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 220 - 374
Target Start/End: Original strand, 36979752 - 36979906
Alignment:
Q  220 cttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgat 319  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||| ||| |||||||||||||||| ||||||     
T  36979752 cttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaa 36979851  T
Q  320 gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtag 374  Q
    ||||||||| | || ||||| |||| |||||||| | ||| ||||||||| ||||    
T  36979852 gttgttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtag 36979906  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 36984396 - 36984462
Alignment:
Q  237 gcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaa 303  Q
    ||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||||||    
T  36984396 gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaa 36984462  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 446
Target Start/End: Original strand, 36996413 - 36996587
Alignment:
Q  272 ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg 371  Q
    ||||||||||||||| | || || |||||||||  | | ||||| |  ||||||||| | || ||||| |||| ||||| || ||||| ||||||||| |    
T  36996413 ctgtgtttcctcccagtgaggtgcgaattcaagtctttattgcttgtagttgttaccaaacataaagcacaagtccactttttctgcatttccttctgtg 36996512  T
Q  372 tagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg 446  Q
    || ||  |||  || ||||| |||||||| ||||||||| |||||||||||||||||| |||||| |||||||||    
T  36996513 tacaatcctttggaaactctccaccagctctgtcactctctgctgttcctttagtttccactgtgactgatgatg 36996587  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 446
Target Start/End: Original strand, 36980522 - 36980712
Alignment:
Q  256 agcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcc 355  Q
    |||||||| | || ||||||||||||| |||||||| |||||| |||||  | |||  | ||||||||||||| | || | ||| |||| |||||||  |    
T  36980522 agcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctc 36980621  T
Q  356 tgcagttccttctgcgtagaactcttgagatac-tcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg 446  Q
    |||| ||||||||| |||||||||  |||  || ||| |||||||  | ||||||| |||||||||||| ||||| |||||| |||||||||    
T  36980622 tgcacttccttctgtgtagaactc-cgaggaacttctccaccagccctttcactctctgctgttcctttggtttccactgtgactgatgatg 36980712  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 37000387 - 37000469
Alignment:
Q  245 gctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttac 327  Q
    |||||||||||   ||||||| ||||| |||||||||||||||| || ||||||||||| ||| ||| |||||||||||||||    
T  37000387 gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttac 37000469  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 446
Target Start/End: Original strand, 36995772 - 36995883
Alignment:
Q  335 aaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactg 434  Q
    ||||| |||| |||||||| ||||| | ||||||| ||||||||||   ||  |||| ||| |||| || |||||| |||||||||||| ||||||| |     
T  36995772 aaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctatta 36995871  T
Q  435 tggctgatgatg 446  Q
    ||||||||||||    
T  36995872 tggctgatgatg 36995883  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 36986225 - 36986329
Alignment:
Q  272 ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg 371  Q
    ||||||||| | ||| | || |||||||||||| || |||  |||| |||||||||| | || ||||| |||| |||||||| ||||| ||||||||| |    
T  36986225 ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg 36986324  T
Q  372 tagaa 376  Q
    |||||    
T  36986325 tagaa 36986329  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 36984318 - 36984380
Alignment:
Q  141 ctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttgg 203  Q
    ||||| ||| |||||  ||||| ||||||| ||||| ||||| ||||||||||||||||||||    
T  36984318 ctccattctcaacatcagaatttaacttattgctaaaattctcctgtttcacctcctctttgg 36984380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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