View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9735_8 (Length: 404)
Name: NF9735_8
Description: NF9735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9735_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 34297272 - 34297675
Alignment:
| Q |
1 |
aggcaaaatcagattttgtaaggagctatgttcctcttgtaggtataaaaactgcattggatattctagaaaaggagcctaaagggtttgttattttaga |
100 |
Q |
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| T |
34297272 |
aggcaaaatcagattttgtaaggagctatgttcctcttgtaggtataaaaactgcattggatattctagaaaaggagcctaaagggtttgttattttaga |
34297371 |
T |
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| Q |
101 |
cccttatggtgggatgatgcataatataagcagtgaatctattgcttttccccacagaaaaggaaatatttttacaattcagtacctgatatattggaaa |
200 |
Q |
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| T |
34297372 |
cccttatggtgggatgatgcataatataagcagtgaatccattgcttttccccacagaaaaggaaatatttttacaattcagtacctgatatattggaaa |
34297471 |
T |
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| Q |
201 |
gaagcagacaatgacaaaggtagtgattatattgattggataagaggattctattcttcaatgacacctttcgtttcatatggtccaagggctgcatata |
300 |
Q |
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| T |
34297472 |
gaagcagacaatgacaaaggtagtgattatattgattggataagaggattctattcttctatgactccttttgtttcatatggtccaagggctgcatata |
34297571 |
T |
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| Q |
301 |
ttaattacatggattttgaccttggagtaatggagctaattagttttgatgatgatttggtgaaagcaagggtttggggtgaaaagtacttcttgagtaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34297572 |
ttaattacatggattttgaccttggagtaatggagctaattagttttgatgatgatttggtgaaagcaagggtttggggtgaaaagtacttcttgagtaa |
34297671 |
T |
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| Q |
401 |
ctat |
404 |
Q |
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|||| |
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| T |
34297672 |
ctat |
34297675 |
T |
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