View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9736_1 (Length: 608)

Name: NF9736_1
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9736_1
NF9736_1
[»] chr5 (11 HSPs)
chr5 (35-487)||(11860751-11861203)
chr5 (79-487)||(11828663-11829071)
chr5 (319-487)||(11901309-11901477)
chr5 (172-301)||(11901516-11901645)
chr5 (319-487)||(12039824-12039992)
chr5 (159-301)||(12039643-12039785)
chr5 (124-288)||(11732512-11732676)
chr5 (533-597)||(11861356-11861420)
chr5 (525-584)||(11829222-11829281)
chr5 (316-464)||(11732725-11732876)
chr5 (540-582)||(12040158-12040200)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 35 - 487
Target Start/End: Original strand, 11860751 - 11861203
Alignment:
Q  35 acgaggaggaagaaagcgatgtcgtcatcgataataaatttatggattttctcgagccacatcagaatctgaaagtgctattagtcgtcgggtaccatgg 134  Q
    ||||||||||||||||| |||||| ||| |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  11860751 acgaggaggaagaaagcaatgtcgacattgataataaatttatcgattgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatgg 11860850  T
Q  135 ccacatgttgtctaattggctcacttcacttcaattccttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagctt 234  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11860851 ccacatgttgtctaattggctcgcttcacttcaattccttggtaaatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagctt 11860950  T
Q  235 ccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgcaaaggacaatcaagataatacnnnnnnnttctttccatgcttgacgg 334  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||   ||||||       |||||||||| ||||| ||    
T  11860951 ccacatctcaaggttctccaacttcggagattggactctttgaaattcattgcagagaacaatcacactaatacaccaaaattctttccatccttgaagg 11861050  T
Q  335 aacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagacagaccatctttcagttgcatttcaaagctaaatat 434  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||    
T  11861051 aacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcatttcaaagctaaatat 11861150  T
Q  435 ccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg 487  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  11861151 ccaatattgtcctcagttagcttccatgccactatatcccggtcttgatgatg 11861203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 79 - 487
Target Start/End: Original strand, 11828663 - 11829071
Alignment:
Q  79 gattttctcgagccacatcagaatctgaaagtgctattagtcgtcgggtaccatggccacatgttgtctaattggctcacttcacttcaattccttgtta 178  Q
    |||| |||| |||||||||  |||||| ||||||||||||| ||||||||| | || ||||  |||||||| |||||| |||||||||||| ||||||||    
T  11828663 gattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgccttgtta 11828762  T
Q  179 agtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaa 278  Q
    ||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  11828763 agtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctttgaa 11828862  T
Q  279 attcattgcaaaggacaatcaagataatacnnnnnnnttctttccatgcttgacggaacttacaatctcagattgtcctaatctaaaaagttggtgggaa 378  Q
    ||| ||||||||| ||||||||| | ||||       |||||||||| ||||| |||||| |||||||||||||||| ||| |||||| |||||||||||    
T  11828863 atttattgcaaagaacaatcaagctgatacacctatattctttccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaa 11828962  T
Q  379 aaagacatatcggaaaaagacagaccatctttcagttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtc 478  Q
    || ||||||| ||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||    
T  11828963 aatgacatatgggacaatgatagaccatctttcagttgcatttcaaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtc 11829062  T
Q  479 ttgatgatg 487  Q
    |||||||||    
T  11829063 ttgatgatg 11829071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 319 - 487
Target Start/End: Complemental strand, 11901477 - 11901309
Alignment:
Q  319 tttccatgcttgacggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagacagaccatctttcagttgca 418  Q
    ||||||| ||||| |||||||||||| || |||||||||||||| ||||||||||||||||| || || | ||  || || ||||||| |||||||||||    
T  11901477 tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgca 11901378  T
Q  419 tttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg 487  Q
    ||||||| ||||| ||||||| ||||||| | |||||||||||||| |||||||| |||||||||||||    
T  11901377 tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg 11901309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 11901645 - 11901516
Alignment:
Q  172 cttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggact 271  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||| |||||||||||||||| |||| ||| ||||||    
T  11901645 cttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaaattcggagactggact 11901546  T
Q  272 ctttgaaattcattgcaaaggacaatcaag 301  Q
    || |||||||||||||| |  |||||||||    
T  11901545 ctctgaaattcattgcagaaaacaatcaag 11901516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 319 - 487
Target Start/End: Original strand, 12039824 - 12039992
Alignment:
Q  319 tttccatgcttgacggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagacagaccatctttcagttgca 418  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||| |||||||||||||  || |||| ||| || || |||||||||||||||||||    
T  12039824 tttccatccttgaaggaacttacaatctcggattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgca 12039923  T
Q  419 tttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg 487  Q
    |||| || |||||| |||||||||| ||  |||||||||||||||| ||||||||   |||||||||||    
T  12039924 tttccaaactaaatgtccaatattgccccaagttagcttgcatgccactatatcctaatcttgatgatg 12039992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 159 - 301
Target Start/End: Original strand, 12039643 - 12039785
Alignment:
Q  159 ttcacttcaattccttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaactt 258  Q
    ||||||||| |  |||||||||||||||||||| ||||| || || ||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  12039643 ttcacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaactt 12039742  T
Q  259 cgtagattggactctttgaaattcattgcaaaggacaatcaag 301  Q
    || || ||||||||  ||||||||||||||||  |||||||||    
T  12039743 cgaaggttggactcactgaaattcattgcaaaaaacaatcaag 12039785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 288
Target Start/End: Original strand, 11732512 - 11732676
Alignment:
Q  124 gggtaccatggccacatgttgtctaattggctcacttcacttcaattccttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaa 223  Q
    |||||| |||||| ||  || ||||| ||||||  ||| ||||||| ||||||||||||||||||||  |||||||| || ||||||||||| || ||||    
T  11732512 gggtacaatggccgcaccttatctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaa 11732611  T
Q  224 tggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgca 288  Q
    | ||||| ||||||  |||||||| |||||| ||||| || ||||| ||| |  |||||||||||    
T  11732612 tcgatcaccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgca 11732676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 533 - 597
Target Start/End: Original strand, 11861356 - 11861420
Alignment:
Q  533 tggctcgaaaacctcatttcacttaaggaacttcacattagagattgttttaatttaacgtctct 597  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  11861356 tggctcaaaaacttcatttcacttgaggaacttcacattagagattgttttaatttagcgtctct 11861420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 584
Target Start/End: Original strand, 11829222 - 11829281
Alignment:
Q  525 cagagagttggctcgaaaacctcatttcacttaaggaacttcacattagagattgtttta 584  Q
    |||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||||    
T  11829222 cagagagttggcttaaaaacttcatttcacttgaggaacttcacattagagattgtttta 11829281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 464
Target Start/End: Original strand, 11732725 - 11732876
Alignment:
Q  316 ttctttccatgcttgacggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacat---atcggaaaaagacagaccatctttca 412  Q
    |||||||||  ||||| ||| |||||||| || ||||||||||| ||  |||||||||||||||| || |    || | ||||| ||||||||||||||     
T  11732725 ttctttccagccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcc 11732824  T
Q  413 gttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgcc 464  Q
     |||||||||||| |||||||||| || ||||||| | ||||| ||| ||||    
T  11732825 cttgcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgcc 11732876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 582
Target Start/End: Original strand, 12040158 - 12040200
Alignment:
Q  540 aaaacctcatttcacttaaggaacttcacattagagattgttt 582  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  12040158 aaaacttcatttcacttaaggaacttcacattcgagattgttt 12040200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University