View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9736_13 (Length: 326)

Name: NF9736_13
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9736_13
NF9736_13
[»] chr4 (17 HSPs)
chr4 (12-326)||(5551831-5552145)
chr4 (31-326)||(5854265-5854563)
chr4 (21-319)||(5849282-5849583)
chr4 (29-319)||(5887507-5887797)
chr4 (19-292)||(5896382-5896658)
chr4 (28-313)||(3747594-3747879)
chr4 (21-317)||(5557605-5557901)
chr4 (28-141)||(5563397-5563510)
chr4 (31-140)||(5856751-5856860)
chr4 (21-115)||(5612206-5612300)
chr4 (21-108)||(5604088-5604175)
chr4 (182-319)||(5612364-5612501)
chr4 (238-316)||(5856955-5857033)
chr4 (16-70)||(5890816-5890870)
chr4 (21-107)||(5572654-5572740)
chr4 (21-107)||(5584861-5584947)
chr4 (238-286)||(5604302-5604350)
[»] chr8 (1 HSPs)
chr8 (21-68)||(1481830-1481877)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 5551831 - 5552145
Alignment:
Q  12 cagaacctgtggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaata 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5551831 cagaacctgtggtattggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaacaaacttcatttgctgacctttaata 5551930  T
Q  112 gaaaccgtcacactatcctaatagtatgagcaatctttgtttcgtgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatg 211  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5551931 gaaactgtcacactatcctgatagtatgagcagtctttgtttcgcgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccaag 5552030  T
Q  212 ttgcgaagtatttttcttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaaca 311  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5552031 ttgcgaagtatttttcttgtaacttaccattgaaattgttgcaagaaatgtccacaatctgaatcattttccaatgcttatctgcttgtgaatgtgaaca 5552130  T
Q  312 ttctatggttccatg 326  Q
    |||||||||||||||    
T  5552131 ttctatggttccatg 5552145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 5854563 - 5854265
Alignment:
Q  31 ccttcaaaatgattggatgagaaatcaatggctgtgaagatt-----gctagaattttaaccaacttcatttgctgacctttaatagaaaccgtcacact 125  Q
    ||||| ||||||||||||||||||||||| ||||||||||||     | ||||||||||||||||||||| | |||||||||| | ||||| |||||| |    
T  5854563 ccttcgaaatgattggatgagaaatcaatcgctgtgaagattatattgttagaattttaaccaacttcatctcctgacctttattggaaactgtcacagt 5854464  T
Q  126 atcctaatagtatgagcaatctttgtttcgtgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatgttgcgaagtatttt 225  Q
    ||||| ||| |||| | | ||||| ||| | |||||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  5854463 atcctgataatatgtgtagtctttctttagcgtgtggatgaagtctgatataacatcatcttcatcttgca--attctatcccatgttgcgaagtatttt 5854366  T
Q  226 tcttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaacattctatggttccat 325  Q
    |||||||  || |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||    
T  5854365 tcttgtagttttccattgaaattgttgaaagcaatgtccacaatctgaatcattttctaatgcttatctgcttgtgaatgtgaacattccatggatccat 5854266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 5849583 - 5849282
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccgtc 120  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||  || |||| ||||  ||||||||| | ||||| |||    
T  5849583 tggtattggtccttcgaaatgattggatgagaaatcaatggctgtaaagatttttagaattttttcctacttaattttttgacctttattggaaacggtc 5849484  T
Q  121 acactatcctaatagtatgagcaatctttgtttcg--tg-tgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatgttgcga 217  Q
    |||||||| |  || |||||| ||   || ||||   || ||| ||||||||||| ||||  ||||  |||||| ||||||||||| ||||||||   ||    
T  5849483 acactatcttggtaatatgagtaaaagttctttcccatgctgtagatgaagtctgatatagaatcattttcatcatgcatcattctttcccatgtcatga 5849384  T
Q  218 agtatttttcttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaacattctat 317  Q
    | ||||||||| |||  || |||||||||||| | |||| |||||||||||| ||||||||||||||| |||||| |  | |||||||||||||||||||    
T  5849383 aatatttttctggtatttttccattgaaattgttcaaagcaatgtccacaatttgaatcattttccaaggcttattttctagtgaatgtgaacattctat 5849284  T
Q  318 gg 319  Q
    ||    
T  5849283 gg 5849282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 5887797 - 5887507
Alignment:
Q  29 gtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccgtcacactatc 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |  |||| | ||  ||||||||| | ||||| |||||||||||    
T  5887797 gtccttcaaaatgattggatgagaaatcaatggctgtaaagattgttagaattttatcatacttaagttcttgacctttattggaaactgtcacactatc 5887698  T
Q  129 ctaatagtatgagcaatctttgtttcgtgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatgttgcgaagtatttttct 228  Q
     |  || |||||| |    ||   ||   | ||||||||||||| | | | |||   |||||||||||||||||| |||||||||| ||| |||||||||    
T  5887697 ttggtaatatgagaagaagttaaatctcatatggatgaagtctgatttcaaatcgttttcatcttgcatcattctttcccatgttgtgaaatatttttct 5887598  T
Q  229 tgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaacattctatgg 319  Q
     |||  || |||||||||||| |||||| |||||||||||| ||||||||||||||| |||||| |  | | |||| ||||||||||||||    
T  5887597 ggtatttttccattgaaattgttgaaagcaatgtccacaatttgaatcattttccaaggcttattttctagagaatctgaacattctatgg 5887507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 5896658 - 5896382
Alignment:
Q  19 tgtggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccg 118  Q
    |||||||| |||||||| |||||||| |||||||||||||||||||| ||||||| || |||||||| ||||| |||    ||||||||| ||||||  |    
T  5896658 tgtggtattggtccttcgaaatgatttgatgagaaatcaatggctgtaaagattgttaaaattttaagcaactgcatcacttgacctttagtagaaattg 5896559  T
Q  119 tcacactatcctaatagtatgagcaatctttgttt---cgtgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatgttgc 215  Q
    |||||||||||| ||| |||| | | ||| |  ||   |  |||||||| ||||||| || |||||    |||||| | | ||||| | |||||||||||    
T  5896558 tcacactatcctgataatatgtgtagtctgtcctttcccccgtgtggataaagtctgatagaacattgttttcatcattcttcattttttcccatgttgc 5896459  T
Q  216 gaagtatttttcttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttat 292  Q
     ||||||||||||||||  || || ||||||||| |||||| |||||||||||| ||||||||||||||| ||||||    
T  5896458 aaagtatttttcttgtagttttccgttgaaattgttgaaagcaatgtccacaatttgaatcattttccaaggcttat 5896382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 3747594 - 3747879
Alignment:
Q  28 ggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccgtcacactat 127  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| |  ||||||||| | ||||||||||||||||    
T  3747594 ggtccttcaaaatgattcgatgagaaatcaatggctgtgaagattgttagaattttaacaaactccatatcttgacctttattggaaaccgtcacactat 3747693  T
Q  128 cctaatagtatgagcaatctttgtttcgtgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatgttgcgaagtatttttc 227  Q
    | | ||| |||| |     |   |    |||  |||| || || | || | |||||  |||||| ||||||||||| ||||||| || ||| ||||||||    
T  3747694 catgataatatgggttgaatgcctccactgtcgggataaattccgatacatcatcatgttcatcatgcatcattctttcccatgctgtgaaatatttttc 3747793  T
Q  228 ttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaacatt 313  Q
       ||  || |||||||||||| |||||| |||||||||||| ||||||||||||||| |||||| || | ||||| |||||||||    
T  3747794 agatagttttccattgaaattgttgaaagcaatgtccacaatttgaatcattttccaaggcttatttgctagtgaaagtgaacatt 3747879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 5557605 - 5557901
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccgtc 120  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||||  |||||||| | ||||| |||    
T  5557605 tggtattggtccttcaaaatgattggatgagaagtcaatggttgtaaatattgttagaattttaaccaactccatttgtcgacctttattggaaactgtc 5557704  T
Q  121 acactatcctaatagtatgagcaatctttgtttcgtgtgtggatgaagtctggtataacatcaacttcatcttgcatcattctatcccatgttgcgaagt 220  Q
     |||||||||  || |||||  |   |   |  | ||||||||  ||||||| || |  ||||  ||| ||  || ||||||| ||||||| || ||| |    
T  5557705 gcactatcctggtaatatgataataatgaatcccctgtgtggacaaagtctgatacattatcattttcttcacgcttcattctttcccatgatgtgaaat 5557804  T
Q  221 atttttcttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaacattctat 317  Q
    |||||||  ||| ||| |||||||||||| |||||| ||| || ||||| ||||||||||||||| |||||| |    |||||||||||||||||||    
T  5557805 atttttcaggtagcttcccattgaaattgttgaaagcaatatcaacaatttgaatcattttccaaggcttattttcgagtgaatgtgaacattctat 5557901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 5563397 - 5563510
Alignment:
Q  28 ggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccgtcacactat 127  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||  || || ||||||||||| ||||| |||| |||||    
T  5563397 ggtccttcaaaatgattggatgataaatcaatggctgtgaagatttttaaaattttaaccaactctatctgttgacctttaatggaaactgtcatactat 5563496  T
Q  128 cctaatagtatgag 141  Q
    ||| ||| ||||||    
T  5563497 cctgataatatgag 5563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 5856751 - 5856860
Alignment:
Q  31 ccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaaccgtcacactatcct 130  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||| |||||| ||||||||| | ||||  |||||||||||||    
T  5856751 ccttcaaaatgattggatgataaatcaatggctgtgaagattgttagaatcttaatcaactccatttgttgacctttattggaaattgtcacactatcct 5856850  T
Q  131 aatagtatga 140  Q
     ||| |||||    
T  5856851 gataatatga 5856860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 5612206 - 5612300
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgacctttaatagaaa 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||  ||||||||  ||||||||||||||||||||| |  ||||||||| ||||||    
T  5612206 tggtattggtccttcaaagtgattggatgagaaatcaatggccatgaagatttttagaattttaaccaacttcatctcttgacctttagtagaaa 5612300  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 5604088 - 5604175
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgaccttta 108  Q
    |||||| ||||||||||||   |||||||||||||||||| ||||| | |||| ||||||||||||||||| |||||| |||||||||    
T  5604088 tggtattggtccttcaaaagagttggatgagaaatcaatgactgtgtaaattgttagaattttaaccaactccatttgttgaccttta 5604175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 319
Target Start/End: Original strand, 5612364 - 5612501
Alignment:
Q  182 caacttcatcttgcatcattctatcccatgttgcgaagtatttttcttgtaacttaccattgaaattgctgaaagaaatgtccacaatctgaatcatttt 281  Q
    |||||||||| ||||||||| | |||||||||| |||| || ||||| |||  || || |||||||   |||| | |||||||||||| |||||||||||    
T  5612364 caacttcatcgtgcatcattttttcccatgttgtgaagaatgtttctggtagttttccgttgaaatcattgaatgcaatgtccacaatttgaatcatttt 5612463  T
Q  282 ccaatgcttatctgattgtgaatgtgaacattctatgg 319  Q
    |||| |||||| |  | |||| |||| |||||||||||    
T  5612464 ccaaggcttattttctagtgagtgtgtacattctatgg 5612501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 5856955 - 5857033
Alignment:
Q  238 ccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaatgcttatctgattgtgaatgtgaacattcta 316  Q
    |||||||||||| |||||| |||||| ||||| ||||||||||||||  |||||| |  | ||||||||||||||||||    
T  5856955 ccattgaaattgttgaaagcaatgtcgacaatttgaatcattttccacggcttattttctagtgaatgtgaacattcta 5857033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 5890870 - 5890816
Alignment:
Q  16 acctgtggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaaga 70  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  5890870 acctctggtattggtccttcaaaataattggatgagaaatcaatggctgtaaaga 5890816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5572740 - 5572654
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgaccttt 107  Q
    |||||| ||||||||||||||||| |||||||| || ||||  ||||||| || |||||||||||| || | ||| || ||||||||    
T  5572740 tggtataggtccttcaaaatgattcgatgagaagtcgatggaagtgaagactgttagaattttaactaaatccatctgttgaccttt 5572654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5584947 - 5584861
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaagattgctagaattttaaccaacttcatttgctgaccttt 107  Q
    |||||| ||||||||||||||||| |||||||| || ||||  ||||||| || |||||||||||| || | ||| || ||||||||    
T  5584947 tggtataggtccttcaaaatgattcgatgagaagtcgatggaagtgaagactgttagaattttaactaaatccatctgttgaccttt 5584861  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 5604302 - 5604350
Alignment:
Q  238 ccattgaaattgctgaaagaaatgtccacaatctgaatcattttccaat 286  Q
    |||||||||||| || ||| |||||||||||| ||||||||||||||||    
T  5604302 ccattgaaattgttggaagcaatgtccacaatttgaatcattttccaat 5604350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 1481830 - 1481877
Alignment:
Q  21 tggtatcggtccttcaaaatgattggatgagaaatcaatggctgtgaa 68  Q
    |||||||  ||||||||| |||||||||||||||||||||| ||||||    
T  1481830 tggtatcaatccttcaaagtgattggatgagaaatcaatggttgtgaa 1481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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