View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9736_14 (Length: 324)
Name: NF9736_14
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9736_14 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 8683338 - 8683051
Alignment:
| Q |
13 |
aatataaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaacaaagattgaaaaaatgtgcttagtccagacaca |
112 |
Q |
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| T |
8683338 |
aatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaacaaagattgaaaaaatgtgcttagtccagacaca |
8683239 |
T |
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| Q |
113 |
aatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaaccattttgttcattaatactattataaaagttgcttaaaattaaaagcaa |
212 |
Q |
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| T |
8683238 |
aatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaaccattttgttcattaatactattataaaagttgcttaaaattaaaagcaa |
8683139 |
T |
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| Q |
213 |
atacaaattgatcagaaatatttctcacatctcctccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagt |
300 |
Q |
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| T |
8683138 |
atacaaattgatcagaaatatttctcacatctcctccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagt |
8683051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 47579628 - 47579540
Alignment:
| Q |
26 |
ggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
114 |
Q |
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| T |
47579628 |
ggtatcatgtaagtgtatgaaccaacaactacacttggcaatcgggttccgaataaagattgaagaaacgtgctcagtccagaaacaaa |
47579540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 47579393 - 47579340
Alignment:
| Q |
247 |
tccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagt |
300 |
Q |
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| T |
47579393 |
tccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagt |
47579340 |
T |
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