View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9736_15 (Length: 316)
Name: NF9736_15
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9736_15 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 43763176 - 43762885
Alignment:
| Q |
25 |
atcatatttatttcaaacgccattttgcaccagttatacaagagatactgttacaaatatatcatgaaaatgcaccctaaaaaagcaataaaatgaaaat |
124 |
Q |
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| T |
43763176 |
atcatatttatttcaaacgccattttgcaccagttatacaagagatactgttacaaatatatcatgaaaatgcaccctaaaaaagcaataaaatgaaaat |
43763077 |
T |
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| Q |
125 |
acttgctcctcttatcggatcgcataaacaacacctgtcttccaagcagacgaatttggctcttcaatattgcctctatatggtattactcttaaaagag |
224 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43763076 |
acttactcctcttatcggatcgcataaacaacacctgtcttccaagcagacgaatttggctcttcaatattgcatctatatggtattactcttaaaagag |
43762977 |
T |
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| Q |
225 |
ctgatttcaatttcaacccactaatataattcccctatctcctgcataattcctcttagattcctacataccaggcataagaagaaacaagg |
316 |
Q |
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| T |
43762976 |
ctgatttcaatttcaacccactaatataattcccctatctcctgcataattcctcttagattcctacataccaggcataagaagaaacaagg |
43762885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 43757240 - 43757126
Alignment:
| Q |
176 |
gaatttggctcttcaatattgcctctatatggtattactcttaaaa-gagctgatttcaatttcaacccactaatataattcccctatctcctgcataat |
274 |
Q |
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||||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||| |||| | |
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| T |
43757240 |
gaatttgactcttcactattgcctctatatggtattagccttaaaatgagttgatttcaatttcaacccagtaatataattcccttatctccaccatagt |
43757141 |
T |
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| Q |
275 |
tcctcttagattcct |
289 |
Q |
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|| |||||||||||| |
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| T |
43757140 |
tcttcttagattcct |
43757126 |
T |
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