View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9736_3 (Length: 509)
Name: NF9736_3
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9736_3 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 26 - 476
Target Start/End: Original strand, 19755263 - 19755713
Alignment:
| Q |
26 |
tcattttcttcataaatgtgttgttgatcatcttcaacacttttagcattcaaatcttgaggaggttcagaaagcattttctctcggtcttcatcatctt |
125 |
Q |
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| T |
19755263 |
tcattttcttcatcaatgtgttgttgatcatcttcaacacttttatcattcaaatcttgaggaggttcagaaagcattttctctgggtcttcatcatctt |
19755362 |
T |
|
| Q |
126 |
tgggaggactagagtcaactatcatattgtcctcaaagatggggtcaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcatt |
225 |
Q |
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| T |
19755363 |
tgggaggactagagtcaattatcatattgtcctcaaagatggggttaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcatt |
19755462 |
T |
|
| Q |
226 |
gctaactttagcacccttaaacacataaaaaagtcgaagttaataaagaaggtttgttaaagaaaattaagggaattctcaaagttaagtagagatacct |
325 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755463 |
gctaacttcagcaccctgaaacacattaaaaagtcgaagttaataaagaaggtttgttaaagaaaattaagggaattctcaaagttaagtagagatacct |
19755562 |
T |
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| Q |
326 |
tcgacgcattatctccaacgcatgaatgtgcactagcaggtttgccttctttacgccctcgatttttctttatggggcccttcacagctgcttctccatc |
425 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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| T |
19755563 |
tcgacgcattatctccaacgcatgaatgtgtactactaggtttgccttgtttacgccctcgatttttctttatggggcccttcacaacagcttttccatc |
19755662 |
T |
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| Q |
426 |
aattacattgttaccattatctggattttcttgagaatgattgacggaatt |
476 |
Q |
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| T |
19755663 |
agttacattgttaccattatctagattttcttgagaatgattgacggaatt |
19755713 |
T |
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