View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9736_5 (Length: 496)
Name: NF9736_5
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9736_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 496
Target Start/End: Original strand, 50654274 - 50654754
Alignment:
| Q |
15 |
gatggacatcatcacccttctaccccagtcnnnnnnngtataggatgagagaatggaataacataggttataaacttggtggcttctaaggtgagagagc |
114 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50654274 |
gatgaacatcatcacccttctaccccagtcaaaaaaagtataggatgagagaatggaataacataggttataaacttggtggcaga-aaggtgagagagc |
50654372 |
T |
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| Q |
115 |
catcaagttcctcaccagtgtactattggatctattaaaataattaaagggttcagatatattaaaaaattaagagtagcacataagtcttccctcaccc |
214 |
Q |
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| T |
50654373 |
catcaagttcctcaccagtgtaccattggatctattaaaataattaaagggttcagatatattaaaaaattaagagtagcacataagtcttccctcaccc |
50654472 |
T |
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| Q |
215 |
aatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaatttacgccactgacttatcttgttttctactcaagtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654473 |
aatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaatttacgccactgacttatcttgttttctactcaagtg |
50654572 |
T |
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| Q |
315 |
taaaatcaattattgttcagcacaaccagaaaagttgcaacccatgataataataacatnnnnnnnggatagtccagtgcaccaaaactcccgcatatgc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
50654573 |
taaaatcaattattgttcagcacaaccagaaaagttgcgacccatgataataataacataaaaaaaggatagtccagtgcaccaaaagtcccgcatatgc |
50654672 |
T |
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| Q |
415 |
agggtccagggataacaataacatcaataataacaaataatgggtaaacaggaattcaagacaacaatttatgcaaccaaat |
496 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
50654673 |
agggtccagggataacaataacatcagtaataacaaataatgggtgaacaggaattcacgacaacaatttatgcaaccaaat |
50654754 |
T |
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