View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9736_6 (Length: 413)
Name: NF9736_6
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9736_6 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 41 - 386
Target Start/End: Original strand, 41103148 - 41103493
Alignment:
| Q |
41 |
aacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaa |
140 |
Q |
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| T |
41103148 |
aacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaa |
41103247 |
T |
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| Q |
141 |
tcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgcaaatatcagcga |
240 |
Q |
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| T |
41103248 |
tcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgcaaatatcagcga |
41103347 |
T |
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| Q |
241 |
aacacgattctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggc |
340 |
Q |
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| T |
41103348 |
aacacgattctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggc |
41103447 |
T |
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| Q |
341 |
gtttaaccaacacttgattttatattcaagcatctcccagtccatt |
386 |
Q |
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| T |
41103448 |
gtttaaccaacacttcattttatattcaagcatttcccagtccatt |
41103493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
| Q |
120 |
tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc |
184 |
Q |
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| T |
23129044 |
tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc |
23129108 |
T |
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