View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9736_8 (Length: 385)

Name: NF9736_8
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9736_8
NF9736_8
[»] scaffold1652 (3 HSPs)
scaffold1652 (45-289)||(187-416)
scaffold1652 (3-218)||(177-380)
scaffold1652 (3-49)||(175-221)
[»] scaffold0902 (6 HSPs)
scaffold0902 (45-218)||(3459-3632)
scaffold0902 (156-289)||(3477-3622)
scaffold0902 (228-278)||(3468-3518)
scaffold0902 (3-39)||(3495-3531)
scaffold0902 (160-199)||(3298-3337)
scaffold0902 (12-49)||(3597-3634)
[»] scaffold0002 (4 HSPs)
scaffold0002 (3-118)||(165205-165320)
scaffold0002 (156-289)||(165208-165338)
scaffold0002 (52-213)||(165203-165349)
scaffold0002 (228-278)||(165297-165347)
[»] chr6 (12 HSPs)
chr6 (3-118)||(14248406-14248521)
chr6 (156-289)||(14248388-14248518)
chr6 (4-118)||(14316969-14317083)
chr6 (52-213)||(14248377-14248523)
chr6 (156-269)||(14316950-14317060)
chr6 (228-278)||(14351646-14351696)
chr6 (154-211)||(14317026-14317083)
chr6 (228-278)||(14248379-14248429)
chr6 (160-199)||(14248242-14248281)
chr6 (229-278)||(14316942-14316991)
chr6 (53-118)||(14351645-14351710)
chr6 (154-211)||(14351653-14351710)
[»] scaffold1176 (5 HSPs)
scaffold1176 (3-123)||(41-161)
scaffold1176 (156-269)||(69-179)
scaffold1176 (52-211)||(46-190)
scaffold1176 (228-278)||(138-188)
scaffold1176 (160-199)||(313-352)
[»] chr4 (5 HSPs)
chr4 (45-123)||(37245107-37245185)
chr4 (160-211)||(37245129-37245180)
chr4 (228-278)||(37245116-37245166)
chr4 (3-39)||(37245143-37245179)
chr4 (240-278)||(37241922-37241960)
[»] scaffold1801 (1 HSPs)
scaffold1801 (160-199)||(200-239)


Alignment Details
Target: scaffold1652 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 45 - 289
Target Start/End: Complemental strand, 416 - 187
Alignment:
Q  45 agcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggagtggcagcaagaggagcagcagaggga 144  Q
    |||||| |||||||| | |||| |||||| |||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||| |             
T  416 agcggagggagaaatcgcaggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggcagcaagaggagaa--------- 326  T
Q  145 gtaaatatggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatg 244  Q
          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  325 ------atcgtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaggaggagaagaaatcgtaggcgatg 232  T
Q  245 gtgcttgagatggaggagtagagattgacgatggggcgacagcag 289  Q
    || |||||||||||||||||||||| |||||||| | ||||||||    
T  231 gtacttgagatggaggagtagagatcgacgatggagagacagcag 187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 380 - 177
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcaggaacagcagcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgat 102  Q
    |||||||| ||| |||||||||||||||||||||||| | |||||   ||||||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  380 tggaggagtagatatcgacgatggagtcacagcaggagcggcagcaagaggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgat 281  T
Q  103 ggagccacagcaggagtggcagcaagaggagcagcagagggagtaaatatggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcga 202  Q
    ||||| ||||||||||  |||||| |||||| ||            | || |||||||||||| ||||||||||||| ||||||||||||||||||| ||    
T  280 ggagcgacagcaggagaagcagcaggaggagaag------------aaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatggagaga 193  T
Q  203 cagcaggagaagcagc 218  Q
    ||||||||| ||||||    
T  192 cagcaggagcagcagc 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 221 - 175
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcaggaacagcagcgg 49  Q
    |||||||| |||||||||||||||||  ||||||||| |||||||||    
T  221 tggaggagtagagatcgacgatggagagacagcaggagcagcagcgg 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 3459 - 3632
Alignment:
Q  45 agcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggagtggcagcaagaggagcagcagaggga 144  Q
    |||||| |||||||| | ||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3459 agcggagggagaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggcagcaagaggagcagcagaggga 3558  T
Q  145 gtaaatatggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagc 218  Q
    ||||| || ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||    
T  3559 gtaaaaattgtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagc 3632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 3477 - 3622
Alignment:
Q  156 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaag------------aaatcgtaggcgat 243  Q
    ||||| |||||||||||||||||| |||||||||||||||||||  ||||||||||  |||||||||| || ||            |||| |||||||||    
T  3477 aggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggcagcaagaggagcagcagagggagtaaaaattgtaggcgat 3576  T
Q  244 ggtgcttgagatggaggagtagagattgacgatggggcgacagcag 289  Q
    |||||||||| ||||||  ||||||| |||||||| | ||||||||    
T  3577 ggtgcttgagttggagggatagagatcgacgatggagtgacagcag 3622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 3468 - 3518
Alignment:
Q  228 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  3468 agaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatgg 3518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3495 - 3531
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcagga 39  Q
    |||||||| ||||||||||||||||||||||||||||    
T  3495 tggaggagtagagatcgacgatggagtcacagcagga 3531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 3298 - 3337
Alignment:
Q  160 gatggtgcttgagatggaggggtagagatcgacgatggag 199  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  3298 gatggtgctttagatggaggggtagagatcgccgatggag 3337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 3597 - 3634
Alignment:
Q  12 agagatcgacgatggagtcacagcaggaacagcagcgg 49  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  3597 agagatcgacgatggagtgacagcaggagcagcagcgg 3634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 165320 - 165205
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcaggaacagcagcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgat 102  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||| ||||||||||||  |||||||||||| ||||||||| | |||    
T  165320 tggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggat 165221  T
Q  103 ggagccacagcaggag 118  Q
    ||||| ||||||||||    
T  165220 ggagcgacagcaggag 165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 165338 - 165208
Alignment:
Q  156 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagat 255  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||| ||||||   || || |||||| |||||||||||| ||||||||    
T  165338 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagc---aggaggagaaatagtaggcgatggtccttgagat 165242  T
Q  256 ggaggagtagagattgacgatggggcgacagcag 289  Q
    ||||| ||||||||  | ||||| ||||||||||    
T  165241 ggaggggtagagatccaggatggagcgacagcag 165208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 165349 - 165203
Alignment:
Q  52 ggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggagtggcagcaagaggagcagcagagggagtaaata 151  Q
    |||||||| | ||||||||||  |||||||||||| |||||||||||| |||||| |||||||||||  |||||| ||||||             |||||    
T  165349 ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggaggag-------------aaata 165263  T
Q  152 tggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaa 213  Q
      |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  165262 --gtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaa 165203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 165347 - 165297
Alignment:
Q  228 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  165347 agaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatgg 165297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 14248406 - 14248521
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcaggaacagcagcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgat 102  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||| ||||||||||||  |||||||||||| ||||||||| | |||    
T  14248406 tggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggat 14248505  T
Q  103 ggagccacagcaggag 118  Q
    ||||| ||||||||||    
T  14248506 ggagcgacagcaggag 14248521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 14248388 - 14248518
Alignment:
Q  156 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagat 255  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||| ||||||   || || |||||| |||||||||||| ||||||||    
T  14248388 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagc---aggaggagaaatagtaggcgatggtccttgagat 14248484  T
Q  256 ggaggagtagagattgacgatggggcgacagcag 289  Q
    ||||| ||||||||  | ||||| ||||||||||    
T  14248485 ggaggggtagagatccaggatggagcgacagcag 14248518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 14316969 - 14317083
Alignment:
Q  4 ggaggagcagagatcgacgatggagtcacagcaggaacagcagcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatg 103  Q
    ||||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||| ||||||||||||  ||||||||| || ||||||||| | ||||    
T  14316969 ggaggagtagagatcgatgatggagtcacatcaggagcagcagcagaaggagaaatagtaggcgatggtccttgagatggtggggtagagatccatgatg 14317068  T
Q  104 gagccacagcaggag 118  Q
    |||| ||| ||||||    
T  14317069 gagcgacaacaggag 14317083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 213
Target Start/End: Original strand, 14248377 - 14248523
Alignment:
Q  52 ggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggagtggcagcaagaggagcagcagagggagtaaata 151  Q
    |||||||| | ||||||||||  |||||||||||| |||||||||||| |||||| |||||||||||  |||||| ||||||             |||||    
T  14248377 ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggaggag-------------aaata 14248463  T
Q  152 tggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaa 213  Q
      |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  14248464 --gtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaa 14248523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 14316950 - 14317060
Alignment:
Q  156 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagat 255  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||  ||| |||||| ||||||   || || |||||| |||||||||||| ||||||||    
T  14316950 aggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc---agaaggagaaatagtaggcgatggtccttgagat 14317046  T
Q  256 ggaggagtagagat 269  Q
    || || ||||||||    
T  14317047 ggtggggtagagat 14317060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 14351646 - 14351696
Alignment:
Q  228 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  14351646 agaaatcgtaggcgatggtgcttgagatggtggagtagagactgatgatgg 14351696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 14317026 - 14317083
Alignment:
Q  154 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 211  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||||| ||||||    
T  14317026 gtaggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggag 14317083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 14248379 - 14248429
Alignment:
Q  228 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  14248379 agaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatgg 14248429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 14248242 - 14248281
Alignment:
Q  160 gatggtgcttgagatggaggggtagagatcgacgatggag 199  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  14248242 gatggtgctttagatggaggggtagagatcgccgatggag 14248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 14316942 - 14316991
Alignment:
Q  229 gaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    ||||||| |||||| ||||||||||| |||||||||||||| || |||||    
T  14316942 gaaatcgcaggcgagggtgcttgagacggaggagtagagatcgatgatgg 14316991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 14351645 - 14351710
Alignment:
Q  53 gagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggag 118  Q
    ||||||| ||||||||||||| ||||||||| || |||||||  || |||||||  ||||||||||    
T  14351645 gagaaatcgtaggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggag 14351710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 14351653 - 14351710
Alignment:
Q  154 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 211  Q
    ||||||||||||||||||||||| || |||||||  || |||||||  ||||||||||    
T  14351653 gtaggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggag 14351710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 161 - 41
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcaggaacagcagcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgat 102  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||||  |||||||||||| ||||||||| | |||    
T  161 tggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggat 62  T
Q  103 ggagccacagcaggagtggca 123  Q
    ||| | ||| |||||| ||||    
T  61 ggatcgacaacaggagcggca 41  T

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Target: scaffold1176; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 179 - 69
Alignment:
Q  156 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagat 255  Q
    |||||||||||||||||||||||| ||||||||||| |||||||  |||||||||| ||||||   || || |||||| |||||||||||| ||||||||    
T  179 aggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagc---aggaggagaaatagtaggcgatggtccttgagat 83  T
Q  256 ggaggagtagagat 269  Q
    ||||| ||||||||    
T  82 ggaggggtagagat 69  T

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Target: scaffold1176; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 190 - 46
Alignment:
Q  52 ggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggagtggcagcaagaggagcagcagagggagtaaata 151  Q
    |||||||| | ||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||  |||||| ||||||             |||||    
T  190 ggagaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggaggag-------------aaata 104  T
Q  152 tggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 211  Q
      |||||||||||| ||||||||||||||||||||||| | |||||| ||||| ||||||    
T  103 --gtaggcgatggtccttgagatggaggggtagagatccaggatggatcgacaacaggag 46  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 188 - 138
Alignment:
Q  228 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  188 agaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatgg 138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 352 - 313
Alignment:
Q  160 gatggtgcttgagatggaggggtagagatcgacgatggag 199  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  352 gatggtgctttagatggaggggtagagatggacgatggag 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 37245107 - 37245185
Alignment:
Q  45 agcggaaggagaaattgtaggcgatggtgtttgagatggaggtgtagagatcgacgatggagccacagcaggagtggca 123  Q
    |||||| |||||||| |  || ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  37245107 agcggagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 37245185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 37245129 - 37245180
Alignment:
Q  160 gatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 211  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  37245129 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 37245180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 37245116 - 37245166
Alignment:
Q  228 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    ||||||||  || ||||||||||||||||||||||||||||| ||||||||    
T  37245116 agaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatgg 37245166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 37245143 - 37245179
Alignment:
Q  3 tggaggagcagagatcgacgatggagtcacagcagga 39  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37245143 tggaggagtagagatcgacgatggagtcacagcagga 37245179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 37241922 - 37241960
Alignment:
Q  240 cgatggtgcttgagatggaggagtagagattgacgatgg 278  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  37241922 cgatggtgctttagttggaggagtagagattgacgatgg 37241960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 239 - 200
Alignment:
Q  160 gatggtgcttgagatggaggggtagagatcgacgatggag 199  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  239 gatgatgctttagatggaggggtagagatcgacgatggag 200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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