View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9736_9 (Length: 379)
Name: NF9736_9
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9736_9 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 43366114 - 43365746
Alignment:
| Q |
1 |
atatgtaatatgctataactttatttcatagagtgggaccgtggtcatttgcaaaaaagtataggatgaaatttctacccaataattataggtctgcaca |
100 |
Q |
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| T |
43366114 |
atatgtaatatgctataactttatttcatagagtgggaccctggtcatttgcaaaaaagtataggatgaaatttctacccaataattataggtctgcaca |
43366015 |
T |
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| Q |
101 |
aattggtgattgatatacagattttgtatgtgccgttcggctnnnnnnnctcaattaggattttctcaatcgaatttgatgaatgattggtgatacaaat |
200 |
Q |
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| T |
43366014 |
aattggtgatcgatatacagattttgtatgtgccgttcggctaaaaaaactcaattaggattttctcaatcgaatttgatgaatgattggtgatacaaat |
43365915 |
T |
|
| Q |
201 |
atgaatgataaataatgttatgtggatgcaatatttctggtattgaaaaaatacagattgtttgtgggtgcagataattgatgctgttgtggctgcctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43365914 |
atgaatgataaataatgttatgtggatgcaatatttctggtattgaaaaaatacagattgtttgtgggtgcagataattgatgctgttgtggctgcctat |
43365815 |
T |
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| Q |
301 |
cttttgaatgctactcttgttattccagcattggatcatacatctttctggaaagacaacaggtctgtg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43365814 |
cttttgaatgctactcttgttattccagcattggatcatacatctttctggaaagacaacaggtctgtg |
43365746 |
T |
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