View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9736_low_1 (Length: 426)

Name: NF9736_low_1
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9736_low_1
NF9736_low_1
[»] chr3 (20 HSPs)
chr3 (1-423)||(30167004-30167427)
chr3 (1-409)||(49731606-49732014)
chr3 (127-320)||(2813263-2813456)
chr3 (127-320)||(29309592-29309785)
chr3 (128-320)||(6176241-6176433)
chr3 (142-241)||(9379296-9379395)
chr3 (129-241)||(23601959-23602071)
chr3 (125-241)||(54439955-54440071)
chr3 (1-45)||(2813538-2813582)
chr3 (1-45)||(25873148-25873192)
chr3 (1-45)||(29309466-29309510)
chr3 (7-45)||(14904204-14904242)
chr3 (127-236)||(25872955-25873064)
chr3 (1-45)||(6176516-6176560)
chr3 (125-241)||(14867627-14867743)
chr3 (1-45)||(23601831-23601875)
chr3 (186-237)||(30435296-30435347)
chr3 (130-215)||(26010234-26010319)
chr3 (168-236)||(27924913-27924981)
chr3 (176-232)||(28308709-28308765)
[»] chr2 (21 HSPs)
chr2 (1-423)||(45421577-45422000)
chr2 (127-320)||(43627683-43627876)
chr2 (127-221)||(22052811-22052905)
chr2 (127-241)||(31085479-31085593)
chr2 (127-320)||(13550308-13550501)
chr2 (173-320)||(26894375-26894522)
chr2 (173-320)||(26899814-26899961)
chr2 (127-241)||(33548056-33548170)
chr2 (127-228)||(31774868-31774969)
chr2 (1-45)||(33547930-33547974)
chr2 (186-237)||(15017919-15017970)
chr2 (168-215)||(22725302-22725349)
chr2 (1-45)||(22052685-22052729)
chr2 (1-45)||(43627557-43627601)
chr2 (125-200)||(9668889-9668964)
chr2 (10-45)||(13550191-13550226)
chr2 (177-212)||(28598172-28598207)
chr2 (133-195)||(11234352-11234414)
chr2 (180-237)||(26679072-26679129)
chr2 (1-45)||(9949302-9949346)
chr2 (186-238)||(43689090-43689142)
[»] chr7 (22 HSPs)
chr7 (1-423)||(15653365-15653787)
chr7 (1-423)||(46623763-46624173)
chr7 (130-403)||(12378408-12378678)
chr7 (129-241)||(43105497-43105609)
chr7 (127-241)||(45943035-45943149)
chr7 (127-320)||(13440237-13440430)
chr7 (162-237)||(45992795-45992870)
chr7 (168-237)||(27941340-27941409)
chr7 (168-237)||(33796213-33796282)
chr7 (1-45)||(13440111-13440155)
chr7 (1-45)||(3104962-3105006)
chr7 (125-241)||(19728669-19728785)
chr7 (185-241)||(23887326-23887382)
chr7 (185-241)||(23898502-23898558)
chr7 (185-241)||(33821361-33821417)
chr7 (1-45)||(45236008-45236052)
chr7 (1-43)||(45942909-45942951)
chr7 (176-237)||(27601768-27601829)
chr7 (127-200)||(47105493-47105566)
chr7 (1-41)||(12378767-12378807)
chr7 (116-216)||(13554045-13554145)
chr7 (1-45)||(43105369-43105413)
[»] scaffold0418 (1 HSPs)
scaffold0418 (1-356)||(7733-8088)
[»] chr4 (24 HSPs)
chr4 (1-356)||(7662966-7663321)
chr4 (1-384)||(47540983-47541366)
chr4 (1-409)||(3129656-3130061)
chr4 (76-409)||(8654747-8655080)
chr4 (127-320)||(2631582-2631775)
chr4 (127-404)||(20675206-20675483)
chr4 (127-320)||(55298804-55298997)
chr4 (127-320)||(23873239-23873432)
chr4 (168-237)||(19647934-19648003)
chr4 (168-237)||(29553586-29553655)
chr4 (127-232)||(53810025-53810130)
chr4 (127-320)||(8486744-8486937)
chr4 (168-241)||(13158615-13158688)
chr4 (168-237)||(23657620-23657689)
chr4 (168-237)||(49926112-49926181)
chr4 (1-45)||(8487019-8487063)
chr4 (1-45)||(23873514-23873558)
chr4 (1-45)||(55298678-55298722)
chr4 (1-43)||(2631456-2631498)
chr4 (186-237)||(19114679-19114730)
chr4 (125-200)||(42953377-42953452)
chr4 (126-200)||(9992721-9992795)
chr4 (168-237)||(8935300-8935367)
chr4 (8-45)||(20675087-20675124)
[»] chr8 (12 HSPs)
chr8 (1-409)||(7452410-7452818)
chr8 (1-221)||(19384572-19384792)
chr8 (127-320)||(16420773-16420966)
chr8 (125-241)||(11394190-11394306)
chr8 (125-241)||(24793933-24794049)
chr8 (168-237)||(4987911-4987980)
chr8 (1-43)||(16421050-16421092)
chr8 (1-45)||(2872248-2872292)
chr8 (125-200)||(43253608-43253683)
chr8 (127-209)||(43612757-43612839)
chr8 (8-45)||(35405770-35405807)
chr8 (168-237)||(36157382-36157451)
[»] chr1 (16 HSPs)
chr1 (1-409)||(36305842-36306250)
chr1 (1-409)||(21528219-21528631)
chr1 (1-241)||(48265560-48265800)
chr1 (1-195)||(36929225-36929419)
chr1 (127-404)||(37530750-37531027)
chr1 (127-241)||(30970450-30970564)
chr1 (127-320)||(32353060-32353253)
chr1 (127-320)||(48073194-48073387)
chr1 (168-237)||(25504839-25504908)
chr1 (1-45)||(37530624-37530668)
chr1 (1-45)||(48073469-48073513)
chr1 (125-241)||(20795850-20795966)
chr1 (1-45)||(32353335-32353379)
chr1 (125-200)||(17827484-17827559)
chr1 (186-216)||(39477392-39477422)
chr1 (125-241)||(49264806-49264922)
[»] chr5 (13 HSPs)
chr5 (1-409)||(10486594-10487002)
chr5 (127-404)||(34481131-34481408)
chr5 (143-241)||(587716-587814)
chr5 (125-241)||(4400059-4400175)
chr5 (125-241)||(19513307-19513423)
chr5 (1-45)||(34481014-34481058)
chr5 (186-237)||(11574540-11574591)
chr5 (168-237)||(3727245-3727314)
chr5 (1-45)||(6264236-6264280)
chr5 (186-237)||(23923092-23923143)
chr5 (168-215)||(27324990-27325037)
chr5 (168-237)||(22095096-22095165)
chr5 (1-45)||(32918376-32918420)
[»] scaffold0029 (1 HSPs)
scaffold0029 (166-409)||(134528-134771)
[»] scaffold0002 (2 HSPs)
scaffold0002 (166-409)||(312355-312598)
scaffold0002 (166-409)||(327809-328052)
[»] chr6 (17 HSPs)
chr6 (1-224)||(33630155-33630378)
chr6 (1-213)||(1683098-1683310)
chr6 (127-320)||(23347230-23347423)
chr6 (94-320)||(25318005-25318231)
chr6 (94-320)||(26205499-26205725)
chr6 (127-241)||(15674009-15674123)
chr6 (144-237)||(19255841-19255934)
chr6 (144-237)||(33640119-33640212)
chr6 (168-237)||(503378-503447)
chr6 (186-236)||(5085873-5085923)
chr6 (125-195)||(13085721-13085791)
chr6 (8-45)||(23347504-23347541)
chr6 (1-45)||(8872864-8872908)
chr6 (1-45)||(25317912-25317956)
chr6 (1-45)||(26205406-26205450)
chr6 (180-237)||(25036028-25036085)
chr6 (264-320)||(15674150-15674206)
[»] scaffold0131 (1 HSPs)
scaffold0131 (297-409)||(4223-4335)
[»] scaffold0112 (1 HSPs)
scaffold0112 (128-241)||(15492-15605)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 30167427 - 30167004
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  30167427 aaaactgaaacattcaagggaacctgtttgtgccacaccaaatccgcagcatgagccatactagaatagtcctgcgaggttagcacctgataagcaccac 30167328  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcgg-aaacaaaagaacatcaagaagtaaagtcctacactccgcta 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30167327 gaacaatgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggcaaacaaaagaacatcaagaagtaaagtcctacactccgcta 30167228  T
Q  200 acatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30167227 acatctcctcctcccactgccacaatctacgcctccacctccaaaaaacaccctgctgctccagatcaacagagaacaagtctgccacaaacatgagctt 30167128  T
Q  300 attctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaacc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30167127 attctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaacaacgtatcagaaccatcaccaacc 30167028  T
Q  400 ctcctagccatgtgaccaccaaac 423  Q
    |||||||||| |||||||||||||    
T  30167027 ctcctagccacgtgaccaccaaac 30167004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 49732014 - 49731606
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||| ||| ||||  || ||| | |||||| |||||||| || ||||| | |||||    
T  49732014 aaaactgaaatcttcaagggaacctgtttgtgccacaccagctccgcatcagtagccgcaccagagtggtcctgagaggttagcacatgataagaaccac 49731915  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||||||||||||||| | ||||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||    
T  49731914 taacagtgtatccatctgacggagcaggaagccaaacccatctatctgaaacattcagaaacaagagaacatcaagaagtaaagccctacactccgccaa 49731815  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    || ||||||||||||||||||||| ||||| ||||||||||       |||| |||||||| |||||||||||||||||||||||||| |||||| ||||    
T  49731814 caactcctcctcccactgccacaaactacgtctccacctccacataaccccccgctgctccggatcaacagagaacaagtctgccacatacatgaactta 49731715  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||| | || ||||  ||||| |||||||    
T  49731714 ttctctgttaactcaaacagtctacgaaaacggacacaaaaaggaacatcccctaaccacctatcaaaccaaaacaatgtgtcagctccatctccaaccc 49731615  T
Q  401 tcctagcca 409  Q
    |||||||||    
T  49731614 tcctagcca 49731606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 2813456 - 2813263
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |    
T  2813456 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 2813357  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   ||||||||||||||||||||||||    
T  2813356 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaa 2813263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 29309592 - 29309785
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||| ||||||||||||| |||  |||   ||||||||||||||| | |||||||||  ||| || |||||||||||||||||| || |    
T  29309592 ggaagccacacccaactatctgaaacattaggattcaatgaaacatcaagaagtaacgccctacactcatctagcaactcctcctcccactgccataacc 29309691  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||| ||||||| |||||| ||||| |||||   ||||||||||||||||||||||||    
T  29309692 tacgtctccacctccacacctccccccaccgctccgaatcgacagagagcaagtcggccacggacatagacttattctctgttaactcaaacaa 29309785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 320
Target Start/End: Complemental strand, 6176433 - 6176241
Alignment:
Q  128 gaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatct 227  Q
    ||||||| |||||  ||||||||||||| |||  ||||  ||||||||||||||||| |||||||||  ||| || |||||||||||||||| | || ||    
T  6176433 gaagccacacccagttatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgctataacct 6176334  T
Q  228 acgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    ||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   |||||||||| |||||||||||||    
T  6176333 acgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcgacggacatagacttattctctattaactcaaacaa 6176241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 9379296 - 9379395
Alignment:
Q  142 gtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    |||||||||||||| ||| ||||   ||||||||| ||||| | ||||||||||||||||||| |||||||||||||||| || || |||||||||||||    
T  9379296 gtatctgaaacattgggatacaaggaaacatcaagtagtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcctccacctcc 9379395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 23601959 - 23602071
Alignment:
Q  129 aagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatcta 228  Q
    |||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |||    
T  23601959 aagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataaccta 23602058  T
Q  229 cgcctccacctcc 241  Q
     | ||||||||||    
T  23602059 tgtctccacctcc 23602071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 54440071 - 54439955
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||| | |||||||||||||||| |  |||||| |  ||||||||| ||||||| |||||||||| |||| | ||| || ||||||  |||||     
T  54440071 caggaagccacatccaagtatctgaaacaatatgaaacagagcaacatcaagcagtaaagccctacactcctctaataactcttcttcccacgcccacag 54439972  T
Q  225 tctacgcctccacctcc 241  Q
    |||||||||||| ||||    
T  54439971 tctacgcctccaactcc 54439955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2813582 - 2813538
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  2813582 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 2813538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25873192 - 25873148
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  25873192 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 25873148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29309466 - 29309510
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  29309466 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 29309510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 14904242 - 14904204
Alignment:
Q  7 gaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  14904242 gaaaccttcaagggaacctgtttgtgccacaccaaatcc 14904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 25873064 - 25872955
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  |||||| |||||| |||  |||   |||||||| |||||||| |||||||||| ||| || | |||||||||||||||| || |    
T  25873064 ggaagccacacccagctatctgcaacattaggattcaaggaaacatcaaaaagtaaagccctacactcctctagcaacccctcctcccactgccataacc 25872965  T
Q  227 tacgcctcca 236  Q
    |||| |||||    
T  25872964 tacgtctcca 25872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6176560 - 6176516
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  6176560 aaaacagaaaccttcaagggaacctgtttgtgccacacaaaatcc 6176516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 14867743 - 14867627
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||||||||| |||||||| ||| |||| ||||  ||||||||| | ||| | |||||||||| |||| |   |||||||||||  ||||||    
T  14867743 caggaagccaaacccaagaatctgaaatattaggaaccaaagaaacatcaagtattaaggccctacactcctctaataaaacctcctcccacgcccacaa 14867644  T
Q  225 tctacgcctccacctcc 241  Q
     || || ||||| ||||    
T  14867643 cctccgtctccaactcc 14867627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23601831 - 23601875
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||||    
T  23601831 aaaacagaaacctccaagggaacctgtttgtgccacaccaaatcc 23601875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 30435296 - 30435347
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||||||||| |||||| |||||||||||||| |||||| || |||||||||    
T  30435296 cctacactcccctaacagctcctcctcccactcccacaacctccgcctccac 30435347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 26010234 - 26010319
Alignment:
Q  130 agccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctccca 215  Q
    ||||| |||||  ||||||||||||| ||||||| |  |||||||   |||||||||||||||||| ||| ||  |||||||||||    
T  26010234 agccacacccatttatctgaaacattaggaaacacagaaacatcacatagtaaagtcctacactcctctaccaattcctcctccca 26010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 27924981 - 27924913
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 236  Q
    ||||||||| | ||||||| |||||||| |||||| ||||||||||||   |||||||||  |||||||    
T  27924981 aacatcaagcaataaagtcttacactcctctaacacctcctcctcccaagcccacaatctctgcctcca 27924913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 28308709 - 28308765
Alignment:
Q  176 gaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcc 232  Q
    |||||||| | ||||||||| |||| |||||||||||||||  |||||| |||||||    
T  28308709 gaagtaaaattctacactcccctaagatctcctcctcccacgcccacaacctacgcc 28308765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 45421577 - 45422000
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||| |||||||    
T  45421577 aaaactgataccttcaagggaacctgtttgtgtcacaccaaatccgcagcaggagccgtaccagaatagtcctgagaggttagcacctgataagcaccac 45421676  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  45421677 gaacagtgtatccatctaaaggagcataaagccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagaaaagccctacactccgctaa 45421776  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctcc-nnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctt 299  Q
    ||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45421777 catctcctcctcccactgcgacaatctacgcctccacctccaaaaaaaacccctgctgctccagatcaacagagaacaagtctgccacatacatgagctt 45421876  T
Q  300 attctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaacc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45421877 attctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaacaacgtatcagaaccatcaccaacc 45421976  T
Q  400 ctcctagccatgtgaccaccaaac 423  Q
    |||||||||| |||||||||||||    
T  45421977 ctcctagccacgtgaccaccaaac 45422000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 43627683 - 43627876
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |    
T  43627683 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 43627782  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  |  ||||  ||||| ||||| |||||| |||||  ||||   ||||||||||||||||||||||||    
T  43627783 tacgtctccacctccacacctccccccacctctccgaatcaatagagagcaagtcggccacgaacatagacttattctctgttaactcaaacaa 43627876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 22052811 - 22052905
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgcca 221  Q
    |||||||| |||||  ||||||||||||| |||  ||||  ||||||||||||||||| |||||||||| ||| || ||||||||||||||||||    
T  22052811 ggaagccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgcca 22052905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 31085593 - 31085479
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| |    
T  31085593 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactctgctaacagctcctcctcccactgtcacaacc 31085494  T
Q  227 tacgcctccacctcc 241  Q
    | |  ||||||||||    
T  31085493 tgcatctccacctcc 31085479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 13550308 - 13550501
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  ||||  ||||||||||| ||||| ||| |||||| ||| ||  ||||| ||||||||||| || |    
T  13550308 ggaagccacacccagctatctgaaacattaggatccaaagaaacatcaagaattaaagccctgcactcctctagcaagtcctcatcccactgccataacc 13550407  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  |||||||  ||||||||| | |||||| |||||  | ||   ||||||||||||||||||||||||    
T  13550408 tacgtctccacctccacacatccccccactgctccgaatcaacagaaagcaagtccgccacgaatatagacttattctctgttaactcaaacaa 13550501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 26894522 - 26894375
Alignment:
Q  173 caagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacaga 272  Q
    |||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||||||||       ||||  | |||||  | |||||||    
T  26894522 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacaga 26894423  T
Q  273 gaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    || |||||| |  ||||||||   ||||||||||||||||||||||||    
T  26894422 gagcaagtcggtgacagacatagacttattctctgttaactcaaacaa 26894375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 26899961 - 26899814
Alignment:
Q  173 caagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacaga 272  Q
    |||||||||||| |||||||||  ||| || |||||||||||||||||| || ||||| ||||||||||       ||||  | |||||  | |||||||    
T  26899961 caagaagtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacaga 26899862  T
Q  273 gaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    || |||||| |  ||||||||   ||||||||||||||||||||||||    
T  26899861 gagcaagtcggtgacagacatagacttattctctgttaactcaaacaa 26899814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 33548056 - 33548170
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||| | |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |    
T  33548056 ggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 33548155  T
Q  227 tacgcctccacctcc 241  Q
    |||| ||||||||||    
T  33548156 tacgtctccacctcc 33548170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 31774868 - 31774969
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| ||| |||||  ||||||||||||||| | | |||||||||| | |||||||||||| |||  ||||||||    
T  31774868 ggaagccacacccatctatctgaaacattaggagacaaagaaacatcaagaagtaaggccttacactccgccaccatctcctcctctcacgcccacaatc 31774967  T
Q  227 ta 228  Q
    ||    
T  31774968 ta 31774969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33547930 - 33547974
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  33547930 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 33547974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 15017919 - 15017970
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  15017919 cctacactcctctaacatctcctcctcccacacccacaatctccgcctccac 15017970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 22725349 - 22725302
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctccca 215  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  22725349 aacatcaaatagtaaagtcctacactcctctaacatctcctcctccca 22725302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22052685 - 22052729
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| || |||||||||||||||| |||||||||||||||||||    
T  22052685 aaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 22052729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43627557 - 43627601
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||    
T  43627557 aaaacggaaacctttaagggaacctgtttgtgccacaccaaatcc 43627601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 9668964 - 9668889
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||| ||||| |||||||| ||  | ||||| |  ||||||||| |||||||||||||||||| ||||    
T  9668964 caggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaa 9668889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 13550191 - 13550226
Alignment:
Q  10 accttcaagggaacctatttgtgccacaccaaatcc 45  Q
    |||||||||||||||| |||||||||||||||||||    
T  13550191 accttcaagggaacctgtttgtgccacaccaaatcc 13550226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 28598172 - 28598207
Alignment:
Q  177 aagtaaagtcctacactccgctaacatctcctcctc 212  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28598172 aagtaaagtcctacactcccctaacatctcctcctc 28598207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 11234414 - 11234352
Alignment:
Q  133 caaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactcc 195  Q
    |||| ||||| |||||||| ||| | |||||||  ||||||||| ||||||||||||||||||    
T  11234414 caaatccaagaatctgaaatattagtaaacaaagaaacatcaagcagtaaagtcctacactcc 11234352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 26679072 - 26679129
Alignment:
Q  180 taaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||| ||||||||||| ||| ||||||||||||||| | ||||| ||| |||||||||    
T  26679072 taaactcctacactccactaccatctcctcctcccagtcccacattctccgcctccac 26679129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9949346 - 9949302
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||| | ||||| |||||||||||||||||||    
T  9949346 aaaacggaaaccttcaaagaaacctgtttgtgccacaccaaatcc 9949302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 43689142 - 43689090
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccacc 238  Q
    ||||||||||  |||||||||||||||||||| |||||| || |||| |||||    
T  43689142 cctacactcccgtaacatctcctcctcccactcccacaacctccgccgccacc 43689090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 15653787 - 15653365
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||  || ||||| |||||| |||||||| || |||||||||||||    
T  15653787 aaaactgataccttcaagggaacctgtttgtgccacaccaactccgcatcaggagccggaccagaatggtcctgagaggttagcacatgataggcaccac 15653688  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  15653687 gaacagtgtatccatctagaggagcaggaagccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaa 15653588  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  15653587 catctcctcctcccactgccacaatctacgcctccacctccagaaaaccccctgctgctccaaatcaacagagaacaagtctgccatagacatgagctta 15653488  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    ||||| ||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||    
T  15653487 ttctccgttaactcaaacagtctacgaaaacgggcacaaaaaggaacatcccctaaccacctatcaaaccaaaacaacgtatcagatccatctccaaccc 15653388  T
Q  401 tcctagccatgtgaccaccaaac 423  Q
    ||||||||| ||| ||| |||||    
T  15653387 tcctagccacgtggccaacaaac 15653365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 46623763 - 46624173
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| ||| |||||||||||| |||||||| |||| ||| |||||||    
T  46623763 aaaactgataccttcaagggaacctgtttgtgccacaccaactccgcatcaggagccgtaccagaatagtcctgagaggttagcaccttataagcaccac 46623862  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||||| |||||    
T  46623863 aaacagtgtatccatctaaaggagcaggaagccaaacccatgtatctgaaacattcggagacaagataacatcaagaagtaaagccctacactctgctaa 46623962  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    |||            ||||||||| ||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46623963 cat------------ctgccacaaactacgcctccacctccaaaaaaatccctgctgctccaaatcaacagagaacaagtctgccacagacatgagctta 46624050  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| | |||||    
T  46624051 ttctccgttaactcaaacagtctgcgaaaacggacacagaaaggaacatcccctaaccacctatcaaaccaaaacaacgtatcagaaccatctctaaccc 46624150  T
Q  401 tcctagccatgtgaccaccaaac 423  Q
    ||||||||| ||||||| |||||    
T  46624151 tcctagccacgtgaccaacaaac 46624173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 130 - 403
Target Start/End: Complemental strand, 12378678 - 12378408
Alignment:
Q  130 agccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctac 229  Q
    |||||||||||  ||||| ||||||| ||| |||    |||||||||||||   | ||||||||||||||||||||||||||||||||||||||| || |    
T  12378678 agccaaacccagctatctaaaacattaggatacagggaaacatcaagaagt---gccctacactccgctaacatctcctcctcccactgccacaacctgc 12378582  T
Q  230 gcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacgaaa 329  Q
    |||||| ||||        ||||  | ||| |   | |||| ||||||| | |||||||||||||| |||||||||  |||||||||||| |||| || |    
T  12378581 gcctccgcctcaacaaatccccccaccgcttcgacttaacaaagaacaaatttgccacagacatgatcttattctccattaactcaaacagtctatgata 12378482  T
Q  330 acggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccctcc 403  Q
     ||  ||||||  ||||||||||||| |||||||||  ||||||||   |||||||   |||||||||||||||    
T  12378481 ccgctcacagagaggaacatcccctatccacctatcataccaaaacgttgtatcagcctcatcaccaaccctcc 12378408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 43105497 - 43105609
Alignment:
Q  129 aagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatcta 228  Q
    ||||||||||||  ||||||||||||||||||||||   ||||| ||  ||||| | ||||||||| |||||||||||||||||||| |||||||| ||     
T  43105497 aagccaaacccatctatctgaaacattcggaaacaaggaaacattaaagagtaacgccctacactctgctaacatctcctcctcccattgccacaacctg 43105596  T
Q  229 cgcctccacctcc 241  Q
    |||||||||||||    
T  43105597 cgcctccacctcc 43105609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 45943035 - 45943149
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  ||||  ||||||||||||||||| |||||||||| ||| || |||||||||||||||||| ||||    
T  45943035 ggaagccacacccagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacactcctctagcaactcctcctcccactgccataatc 45943134  T
Q  227 tacgcctccacctcc 241  Q
    |||  ||||||||||    
T  45943135 tacatctccacctcc 45943149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 13440237 - 13440430
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||| | |||  |||   ||||||||||||||||| || ||||||  ||| || |||||||||||||| ||| || |    
T  13440237 ggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagcccaacactcatctagcaactcctcctcccactaccataaac 13440336  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   ||||||||||||||||||||||||    
T  13440337 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaa 13440430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 45992795 - 45992870
Alignment:
Q  162 caaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||| ||||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  45992795 caaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 45992870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 27941409 - 27941340
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||  ||||||||| |||||||| |||||| |||||||||||||  ||||||||| |||||||||    
T  27941409 aacatcaaacagtaaagtcttacactcctctaacaactcctcctcccacgcccacaatctccgcctccac 27941340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 33796282 - 33796213
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||  |||||||||||||||||| |||||||||| |||||||||  ||||| ||| |||||||||    
T  33796282 aacatcaaacagtaaagtcctacactcctctaacatctcttcctcccacgcccacagtctccgcctccac 33796213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13440111 - 13440155
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  13440111 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 13440155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3104962 - 3105006
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||    
T  3104962 aaaactgaaaccttcaaggaaacctgattgtgccacaccaaatcc 3105006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 19728669 - 19728785
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||||||||  |||||||| ||| |||||||||  ||||||||| |||||   |||||||||| |||| |   |||||||||||  ||||||    
T  19728669 caggaagccaaacccaaaaatctgaaatattaggaaacaaagaaacatcaagtagtaagaccctacactcctctaataaaacctcctcccacgcccacaa 19728768  T
Q  225 tctacgcctccacctcc 241  Q
     || || ||||| ||||    
T  19728769 cctccgtctccaactcc 19728785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 23887326 - 23887382
Alignment:
Q  185 tcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    |||||||||||||||||||||| |||||||||  ||||| ||| | |||||||||||    
T  23887326 tcctacactccgctaacatctcttcctcccacacccacagtcttctcctccacctcc 23887382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 23898502 - 23898558
Alignment:
Q  185 tcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    |||||||||||||||||||||| |||||||||  ||||| ||| | |||||||||||    
T  23898502 tcctacactccgctaacatctcttcctcccacacccacagtcttctcctccacctcc 23898558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 33821417 - 33821361
Alignment:
Q  185 tcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    ||||||||||||||| |||||| |||||||||  ||||||||| | |||||||||||    
T  33821417 tcctacactccgctagcatctcttcctcccacacccacaatcttctcctccacctcc 33821361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45236008 - 45236052
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||    
T  45236008 aaaacggaaaccttcaagggaacctgtttgtgtcacaccaaatcc 45236052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45942909 - 45942951
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaat 43  Q
    ||||| || |||||||||||||||| |||||||||||||||||    
T  45942909 aaaacggacaccttcaagggaacctgtttgtgccacaccaaat 45942951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 27601829 - 27601768
Alignment:
Q  176 gaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||||||| || |||||||| ||||| ||||||||||||||  |||||| ||||||| ||||    
T  27601829 gaagtaaaatcttacactcccctaacttctcctcctcccacgcccacaacctacgccgccac 27601768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 47105566 - 47105493
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||| ||||| |||||||| ||  | ||||| |  ||||||||| |||||||||||||||||| ||||    
T  47105566 ggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaa 47105493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12378807 - 12378767
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaa 41  Q
    |||||||| ||||||||||||||||  ||||||||||||||    
T  12378807 aaaactgataccttcaagggaacctggttgtgccacaccaa 12378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 13554145 - 13554045
Alignment:
Q  116 ctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctccca 215  Q
    |||||||  ||||||||||||  |||| |||||||| ||  | ||||| |  ||||||||| |||||||||||||||||| |||| |   ||||||||||    
T  13554145 ctaaagggtcaggaagccaaattcaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaatacaacctcctccca 13554046  T
Q  216 c 216  Q
    |    
T  13554045 c 13554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43105369 - 43105413
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    |||||||| ||||||| ||||||||| | ||||||||||||||||    
T  43105369 aaaactgacaccttcaggggaacctaatggtgccacaccaaatcc 43105413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 7733 - 8088
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||    
T  7733 aaaactgataccttcaaggaaacctgtttgtgccacaccaaatccgcagcaggagccataccagaatagtcctgagaggttagcacctgataagcaccac 7832  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  7833 gaacagtgtatccatctaaaggagcaggaagccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaa 7932  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  7933 catctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaacagagaacaagtctgccatagacatgagctta 8032  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 356  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8033 ttctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 8088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 7663321 - 7662966
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||    
T  7663321 aaaactgataccttcaaggaaacctgtttgtgccacaccaaatccgcagcaggagccataccagaatagtcctgagaggttagcacctgataagcaccac 7663222  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  7663221 gaacagtgtatccatctaaaggagcaggaagccaaacccatgtatctgaaacattcggaaacaaaagaacatcaagaagtaaagccatacactccactaa 7663122  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  7663121 catctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaacagagaacaagtctgccatagacatgagctta 7663022  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 356  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7663021 ttctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 7662966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 47540983 - 47541366
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||| ||| || |  || ||| | |||||| |||||||| || ||||| |||||||    
T  47540983 aaaactgaaatcttcaagggaacctgtttgtgccacaccaactccgcatcagtagtcgcaccagagtggtcctgagaggttagcacatgataagcaccac 47541082  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||||||||||||||| | |||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47541083 taacagtgtatccatctgacggagcaggaaaccaaacctatctatctgaaacattcggaaacaaaagaacatcaagaagtaaagccctacactccgctaa 47541182  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    ||||||||||| |||||||||||| | ||| ||||||||||        ||| ||||||||  ||||||||| |||||||||||||||||||||| ||||    
T  47541183 catctcctccttccactgccacaaacgacgtctccacctccacataactcccggctgctccgaatcaacagaaaacaagtctgccacagacatgaactta 47541282  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatca 384  Q
    ||||||||||||||||||| ||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||| ||||||||    
T  47541283 ttctctgttaactcaaacagtctacaaaaacgaacacaaaaaggaacatcccctaaccacctatcaaaccaaaacaacgtatca 47541366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 3130061 - 3129656
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||||| |||||| |||||||| |||||| ||| || |   | ||| | |||||  |||||||| || ||||| |||||||    
T  3130061 aaaactgaaatcttcaagggaacctgtttgtgtcacaccaactccgcaacagtagtcgcgccagagtggtcctaagaggttagcacatgataagcaccac 3129962  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||| ||||||||||| | ||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  3129961 taacaatgtatccatctgacggagcaggaagccaaacccatctatctgaaacattcggaagcaagagaacatcaagaagtaaagccctacactccgctaa 3129862  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    ||||||||||   ||||||||||| | ||| ||||||||||       |||  ||||||||  ||||| |||||||||||||||||||||||||| ||||    
T  3129861 catctcctcc---cactgccacaaacaacgtctccacctccacgtaacccctagctgctccgaatcaatagagaacaagtctgccacagacatgaactta 3129765  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    ||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||||||| | ||||||||| | |||||||  ||||| |||||||    
T  3129764 ttctctgttaactcaaacagtctactaaaacggacacaaaaaggaacatcccctaaccacctaccaaaccaaaacaatgtatcagctccatctccaaccc 3129665  T
Q  401 tcctagcca 409  Q
    |||||||||    
T  3129664 tcctagcca 3129656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 76 - 409
Target Start/End: Complemental strand, 8655080 - 8654747
Alignment:
Q  76 gaggttagtacctgataggcaccacgaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaa 175  Q
    |||||||| || ||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  8655080 gaggttagcacatgataagcaccactaacagtgtatccctctgacggagcaggaagccaaacccatctatctgaaacattcggaaacaagagaacatcaa 8654981  T
Q  176 gaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaa 275  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||       ||||  |||||||  ||||||||| ||    
T  8654980 gaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaacagataa 8654881  T
Q  276 caagtctgccacagacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaac 375  Q
    |||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||||||||||||    
T  8654880 caagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaac 8654781  T
Q  376 cacgtatcagaaccatcaccaaccctcctagcca 409  Q
     |||||| ||  ||||| ||||||||||||||||    
T  8654780 aacgtattagctccatctccaaccctcctagcca 8654747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 2631582 - 2631775
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |    
T  2631582 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 2631681  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| |||||||||||   ||||||||||||||||||||||||    
T  2631682 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggccacagacatagacttattctctgttaactcaaacaa 2631775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 404
Target Start/End: Original strand, 20675206 - 20675483
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   |||||||||||||||||||||||||||  | | || |||||||||||||||||| || |    
T  20675206 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagtcctacactcatcaagcaactcctcctcccactgccataacc 20675305  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacg 326  Q
    |||| ||||||||||       ||||  | |||||  ||||||| ||| |||||| ||||| || ||   |||||||||||||||||||||||| |  |     
T  20675306 tacgtctccacctccacacctccccccaccgctccgaatcaacaaagagcaagtcggccacggatatagacttattctctgttaactcaaacaaccgcct 20675405  T
Q  327 aaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccctcct 404  Q
    ||| || ||||| |  ||| | |||||||||||||||||  |||||||| | || |||   ||||||||||| |||||    
T  20675406 aaaccgcacacaaagaggagcctcccctaaccacctatcagaccaaaacgaagtgtcaaccccatcaccaactctcct 20675483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 320
Target Start/End: Original strand, 55298804 - 55298997
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||| | |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |    
T  55298804 ggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataaac 55298903  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   ||||||||||||||||||||||||    
T  55298904 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaa 55298997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 23873432 - 23873239
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||| | |||  |||   ||||||||||||||||| |||||||||  ||| || ||||||||||||||||||  | |    
T  23873432 ggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccattacc 23873333  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   ||||||||||||||||||||||||    
T  23873332 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaa 23873239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 19647934 - 19648003
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  19647934 aacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 19648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 29553655 - 29553586
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||  |||||||||||||||||| |||||| |||||||||||||  ||||||||| |||||||||    
T  29553655 aacatcaaacagtaaagtcctacactcctctaacaactcctcctcccacgcccacaatctccgcctccac 29553586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 53810025 - 53810130
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||| ||| | ||||||||  ||||| |||||||||||| ||||||| || |||||||||  ||||||||    
T  53810025 ggaagccatacccatttatctgaaacatttggaaccaacaaaacatcaaatagtaacgtcctacactcctctaacatatcttcctcccacgcccacaatc 53810124  T
Q  227 tacgcc 232  Q
    | ||||    
T  53810125 tgcgcc 53810130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 8486937 - 8486744
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| ||||||||   ||| || ||||| |||||||||||| || |    
T  8486937 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactaatctagcaactccttctcccactgccataacc 8486838  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | | |||  ||||||||||| ||||||  | || |||||   ||||||||||||||||||||||||    
T  8486837 tacgtctccacctccacacctccccccaccggtccgaatcaacagagagcaagtcgacgacggacatagacttattctctgttaactcaaacaa 8486744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 13158688 - 13158615
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    |||||||||||| |||||||| |||| | |||||||||| | |||||||  |||||| ||||||||||||||||    
T  13158688 aacatcaagaagcaaagtcctccacttctctaacatctcttactcccacgcccacaacctacgcctccacctcc 13158615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 23657620 - 23657689
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || | ||||||||||||| |||||| |||||||||||||  ||||||||| |||||||||    
T  23657620 aacatcaagcagaagagtcctacactcctctaacaactcctcctcccacgcccacaatctccgcctccac 23657689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 49926181 - 49926112
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || |||| |||||||||| |||||| |||||||||||||  ||||||||| |||||||||    
T  49926181 aacatcaagcagaaaagccctacactccactaacaactcctcctcccacgcccacaatctccgcctccac 49926112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8487063 - 8487019
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  8487063 aaaacagaaaccttcaagggaacctgtttgtgccacaccaaatcc 8487019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23873558 - 23873514
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  23873558 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 23873514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 55298678 - 55298722
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  55298678 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 55298722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2631456 - 2631498
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaat 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  2631456 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaat 2631498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 19114679 - 19114730
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||||||||| |||| |||||||||||||||  ||||||||| |||||||||    
T  19114679 cctacactcctctaatatctcctcctcccacacccacaatctccgcctccac 19114730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 42953452 - 42953377
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||||||||| |||| ||| | | |||||||||  ||||||||| ||||| | |||||||||| ||||    
T  42953452 caggaagccaaacccaagaatctaaaataataggaaacaaagaaacatcaagcagtaaggccctacactcctctaa 42953377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 9992795 - 9992721
Alignment:
Q  126 aggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    ||||||||||||||||| ||||| || ||| ||||||| |  ||||||||| ||||| | |||||||||| ||||    
T  9992795 aggaagccaaacccaagaatctgtaatattaggaaacagagaaacatcaagcagtaaggccctacactcctctaa 9992721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 8935300 - 8935367
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || | || |||||||||| |||||||||||||||||||| ||| |||||| |||||||||    
T  8935300 aacatcaagcagaagagccctacactcctctaacatctcctcctcccac-gcc-caatctccgcctccac 8935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 20675087 - 20675124
Alignment:
Q  8 aaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  20675087 aaaccttcaagggaacctgtttgtgccacaacaaatcc 20675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 7452410 - 7452818
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||     ||||| |||||| |||||||| || ||||| |||||||    
T  7452410 aaaactgaaaccttcaagggaacctgtttgtgccaaaccaactccgcatcagtagccgcgtcagaatggtcctgagaggttagcacatgataagcaccac 7452509  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  7452510 gaacagtgtatccatctgaaggagcaggaagccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactcctctaa 7452609  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
     | | ||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  7452610 taacacctcctcccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaacagagaacaagtctgccacagacataagctta 7452709  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||    
T  7452710 ttctccgttaactcaaacagtctacgaaaacggacacagaaaggaacatcccctaaccacctatcataccaaaacaacgtatcagaaccatctccaaccc 7452809  T
Q  401 tcctagcca 409  Q
    |||||||||    
T  7452810 tcctagcca 7452818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19384792 - 19384572
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||| | |||||||||||||| ||||||||||||||| |||||| ||| || |  || ||| | |||||| |||||||| || ||||| |||||||    
T  19384792 aaaactgagatcttcaagggaacctgtttgtgccacaccaactccgcatcagtagtcgcaccagagtggtcctgagaggttagcacatgataagcaccac 19384693  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||||||||||||||| | ||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||| |||||||||| ||||    
T  19384692 taacagtgtatccatctgacggagcaggaagccaaacccatctatctgaaacactcggaaacaagagaacatcaagaagtaaagccctacactccactaa 19384593  T
Q  201 catctcctcctcccactgcca 221  Q
    |||||||||||||||||||||    
T  19384592 catctcctcctcccactgcca 19384572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 16420966 - 16420773
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   |||||| |||||||||| ||||| |||  ||| || |||||||||||||||||| || |    
T  16420966 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcgagaagtaaagccctacgctcatctagcaactcctcctcccactgccataacc 16420867  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| |||||||||||   ||||||||||||||||||||||||    
T  16420866 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggccacagacatagacttattctctgttaactcaaacaa 16420773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 11394306 - 11394190
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||||||||| |||||||| ||| |||||||||| ||| ||||| ||||| | |||||||||| |||| |   |||||||||||  ||||||    
T  11394306 caggaagccaaacccaagaatctgaaatattaggaaacaaaaaaacttcaagcagtaaggccctacactcctctaataaaacctcctcccacgcccacaa 11394207  T
Q  225 tctacgcctccacctcc 241  Q
     || |||||||| ||||    
T  11394206 cctccgcctccaactcc 11394190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 24793933 - 24794049
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||||||||| |||||||| ||| |||||||||  ||||||||| ||||| |  ||||||||| |||| |   |||||||||||  ||||||    
T  24793933 caggaagccaaacccaagaatctgaaatattaggaaacaaagaaacatcaagcagtaatgctctacactcctctaataaaacctcctcccacgcccacaa 24794032  T
Q  225 tctacgcctccacctcc 241  Q
     || ||||||| |||||    
T  24794033 cctccgcctccgcctcc 24794049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 4987980 - 4987911
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || |||| |||||||||| ||||||||||||||||||||  |||||||||  ||||||||    
T  4987980 aacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctctgcctccac 4987911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16421092 - 16421050
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaat 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  16421092 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaat 16421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2872248 - 2872292
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||    
T  2872248 aaaacggaaacctttaagggaacctgtttgtgccacaccaaatcc 2872292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 43253683 - 43253608
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||| ||||| |||||||| ||  | ||||| |  ||||||||| |||||||||||||||||| ||||    
T  43253683 caggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaa 43253608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 43612839 - 43612757
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctc 209  Q
    ||||||||||||||  ||||||||||||| |||| ||| | | ||||||  ||||| | |||||||||| ||||||| |||||    
T  43612839 ggaagccaaacccatttatctgaaacatttggaaccaacacatcatcaaatagtaacgccctacactcctctaacatatcctc 43612757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 35405770 - 35405807
Alignment:
Q  8 aaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  35405770 aaaccttcaagagaacctgtttgtgccacaccaaatcc 35405807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 36157382 - 36157451
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| |||||||||||||||||| |||||  ||| |||||||||  |||||| || | |||||||    
T  36157382 aacatcaagcagtaaagtcctacactcctctaactcctcttcctcccacgcccacaaactcctcctccac 36157451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 36305842 - 36306250
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||| |||   |  ||||| |||||| |||||||| || ||||| |||||||    
T  36305842 aaaactgaaaccttcaagggaacctgtttgtgccaaaccaactccgcatcagtagctgcatcagaatggtcctgagaggttagcacatgataagcaccac 36305941  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    ||| ||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||    
T  36305942 gaatagtgtatccatctgaaggagcaggaagacaaacccatatatctgaaacattcggaaacaatagaatatcaagaagtaaagccctacactcctctaa 36306041  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    ||||||||||| |||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  36306042 catctcctccttccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaacagagaacaagtctgccacatacatgagctta 36306141  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    ||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||    
T  36306142 ttctccgttaactcaaacagtctacgaaaaaggacacagaaaggaacatcccctaaccacctatcataccaaaacaacgtatcagaaccatctccaaccc 36306241  T
Q  401 tcctagcca 409  Q
    |||||||||    
T  36306242 tcctagcca 36306250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 21528219 - 21528631
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||| ||| ||||  ||  || |  ||||| |||||||| || ||||| |||||||    
T  21528219 aaaactgaaatcttcaagggaacctgtttgtgccacaccaactccgcatcagtagccgcacctgagtgatcctgagaggttagcacatgataagcaccac 21528318  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctaca----ctccg 196  Q
     ||| |||||||||||| | |||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| |||||     | |||    
T  21528319 taacggtgtatccatctgacggagcaggaagccaaacccgtctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacgtctccaccg 21528418  T
Q  197 ctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgag 296  Q
    ||||||| ||||||||||||| ||| || ||||| ||||||||||       ||||   ||||||  ||||||||||||||||||| | ||||||||||     
T  21528419 ctaacatgtcctcctcccactaccataacctacgtctccacctccacataaccccccattgctccgaatcaacagagaacaagtctccaacagacatgaa 21528518  T
Q  297 cttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcacca 396  Q
    |||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||   |||| |||    
T  21528519 cttattctctgttaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatcagcttcatctcca 21528618  T
Q  397 accctcctagcca 409  Q
    |||||||||||||    
T  21528619 accctcctagcca 21528631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 48265800 - 48265560
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||| ||| |||||||||||||| ||||||||||||||| |||||| ||| ||||  || ||| | |||||| |||||||| || ||||| |||||||    
T  48265800 aaaactaaaatcttcaagggaacctgtttgtgccacaccaactccgcatcagtagccgcaccagagtggtcctgagaggttagcacatgataagcaccac 48265701  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  48265700 taacagtgtatccatctgacggagcaggaagccaaactcatatatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaa 48265601  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    || ||||||||||||||||||||| ||||| ||||||||||    
T  48265600 caactcctcctcccactgccacaacctacgtctccacctcc 48265560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 36929225 - 36929419
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||     ||||| |||||  |||||||| || ||||| |||||||    
T  36929225 aaaactgaaaccttcaagggaacctgtttgtgccaaaccaactccgcatcagtagccgcgtcagaatggtcctaagaggttagcacatgataagcaccac 36929324  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactcc 195  Q
    ||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  36929325 gaacagtgtatccatctgaaggagcaggaagtcaaacccatatatctgaaacatttggaaacaagagaacatcaagaagtaaagccctacactcc 36929419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 127 - 404
Target Start/End: Original strand, 37530750 - 37531027
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||| |||||  |||||| |||  |||   ||||||||||||||||| |||||||||| ||| || | |||||||||||||||| || |    
T  37530750 ggaagccacacccaactatctacaacattaggattcaaggaaacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacc 37530849  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacg 326  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| ||||||||||||| ||||   |||||||||||||||||||||||| | ||     
T  37530850 tacgtctccacctccacacttccccccaccgctccgaatcaacagagagcaagtctgccacatacatagtcttattctctgttaactcaaacaaccgact 37530949  T
Q  327 aaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccctcct 404  Q
    ||  |  ||||| |  ||||| |||||||||||||||||  |||||||| | |||||||  |||||| |||| |||||    
T  37530950 aagtctcacacaaagaggaacctcccctaaccacctatcagaccaaaacgaagtatcagccccatcatcaactctcct 37531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 30970564 - 30970450
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| ||| |||||  ||||||||||||||| | |||||||||||| | ||||||||||||||||  ||||||||    
T  30970564 ggaagccacacccatttatctgaaacattaggagacaaagaaacatcaagaagtaaggccctacactccgccaccatctcctcctcccacgcccacaatc 30970465  T
Q  227 tacgcctccacctcc 241  Q
    |||||||||||||||    
T  30970464 tacgcctccacctcc 30970450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 32353253 - 32353060
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||| ||||||||| || |    
T  32353253 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctccttccactgccataacc 32353154  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| ||||| |||||   ||||||||||||||||||||||||    
T  32353153 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggccacggacatagacttattctctgttaactcaaacaa 32353060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 48073387 - 48073194
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||| | |||  |||   ||||||||||||||||| || ||||||  ||| || |||||||||||||| ||| || |    
T  48073387 ggaagccacacccagctatctgaaacaataggattcaaggaaacatcaagaagtaaagccccacactcatctagcaactcctcctcccactcccataacc 48073288  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   ||||||||||||||||||||||||    
T  48073287 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaa 48073194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 25504908 - 25504839
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  25504908 aacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 25504839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37530624 - 37530668
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  37530624 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 37530668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48073513 - 48073469
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  48073513 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 48073469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 20795850 - 20795966
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||| ||||| |||||||| ||  | ||||| |  ||||||||| |||||||||||||||||| |||| |    ||||||||||  ||||||    
T  20795850 caggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaaagtcctacactcctctaagacaatctcctcccacgcccacaa 20795949  T
Q  225 tctacgcctccacctcc 241  Q
     || |||||||| ||||    
T  20795950 cctccgcctccaactcc 20795966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32353379 - 32353335
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  32353379 aaaacggaaaccttcaagggaacctgtttgtgccacactaaatcc 32353335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 17827484 - 17827559
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
    |||||||||||||||||| ||||  || ||| | ||||| |  ||||||||| |||||||||||||||||| ||||    
T  17827484 caggaagccaaacccaagaatctataatattagtaaacagataaacatcaagcagtaaagtcctacactcctctaa 17827559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 39477392 - 39477422
Alignment:
Q  186 cctacactccgctaacatctcctcctcccac 216  Q
    |||||||||||||||||||||||||||||||    
T  39477392 cctacactccgctaacatctcctcctcccac 39477422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 49264922 - 49264806
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||| ||||| |||||||| ||  | ||||| |  ||||||||| ||||| |||||||||||| |||| |    ||||||||||  ||||||    
T  49264922 caggaagccaaatccaagaatctgaaatatcagtaaacagagaaacatcaagcagtaatgtcctacactcctctaagacaatctcctcccacgcccacaa 49264823  T
Q  225 tctacgcctccacctcc 241  Q
     || |||||||| ||||    
T  49264822 ccttcgcctccaactcc 49264806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 10487002 - 10486594
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||| ||| ||||  || ||| | |||||| |||||||| || ||||| |||||||    
T  10487002 aaaactgaaatcttcaagggaacctgtttgtgccacaccagctccgcatcagtagccgcaccagagtggtcctgagaggttagcacatgataagcaccac 10486903  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||||||||||||||| | ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10486902 taacagtgtatccatctgacggagcaggaagccaaacccatctatctgaaacattcggaaacaagagaacatcaagaagtaaagccctacactccgctaa 10486803  T
Q  201 catctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagctta 300  Q
    ||| |||||||||||||||||||| ||||| ||||||||||       |||| ||||||||  |||||||||||||||||||||||||||||||| ||||    
T  10486802 catgtcctcctcccactgccacaacctacgtctccacctccacataaccccccgctgctccgaatcaacagagaacaagtctgccacagacatgaactta 10486703  T
Q  301 ttctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccc 400  Q
    |||| ||||||||||||||  ||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||  ||||| |||||||    
T  10486702 ttctatgttaactcaaacagcctacgaaaacggacacaaaaaggaagatcccctaaccacctatccaaccaaaacaacgtatcagctccatctccaaccc 10486603  T
Q  401 tcctagcca 409  Q
    |||||||||    
T  10486602 tcctagcca 10486594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 404
Target Start/End: Original strand, 34481131 - 34481408
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  |||||| |||||| |||  |||   ||||||||||||||||| |||||||||| ||| || | |||||||||||||||| || |    
T  34481131 ggaagccacacccagctatctgcaacattaggattcaaggaaacatcaagaagtaaagccctacactcctctagcaacccctcctcccactgccataacc 34481230  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacg 326  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| ||| | ||||||||||||   |||||||||||||||||||||||| | ||     
T  34481231 tacgtctccacctccacacttccccccaccgctccgaatcaacagagagcaaatatgccacagacatagacttattctctgttaactcaaacaaccgact 34481330  T
Q  327 aaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcaccaaccctcct 404  Q
    ||| |  ||||| |  ||||| |||||||||||||||||  |||||||| | |||||||  ||||||||||| |||||    
T  34481331 aaacctcacacaaagaggaacctcccctaaccacctatcggaccaaaacgaagtatcagccccatcaccaactctcct 34481408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 587716 - 587814
Alignment:
Q  143 tatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctcc 241  Q
    ||||||||||||| ||| |||||  ||||||||||||||||| |||||||||| ||||||| ||||||||||||  ||| |  ||||||||||||||||    
T  587716 tatctgaaacattaggatacaaagaaacatcaagaagtaaagccctacactcctctaacatatcctcctcccacatccatagcctacgcctccacctcc 587814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 4400059 - 4400175
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||||||||| |||||||| ||| |||||||||  ||||||||| |||||   |||||||||| |||| |   |||||||||||   |||||    
T  4400059 caggaagccaaacccaagaatctgaaatattaggaaacaaagaaacatcaagcagtaagaccctacactcctctaataaaccctcctcccacgttcacaa 4400158  T
Q  225 tctacgcctccacctcc 241  Q
     || |||||||| ||||    
T  4400159 cctccgcctccaactcc 4400175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 19513423 - 19513307
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaa 224  Q
    |||||||||||||||||| |||||||| ||| |||||||||  || |||||| ||||| | |||||||||| |||  |   |||||||||||  ||||||    
T  19513423 caggaagccaaacccaagaatctgaaatattaggaaacaaagaaatatcaagcagtaatgccctacactcctctagtaaaacctcctcccacgcccacaa 19513324  T
Q  225 tctacgcctccacctcc 241  Q
     || |||||||| ||||    
T  19513323 cctccgcctccaactcc 19513307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34481014 - 34481058
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  34481014 aaaacggaaaccttcaagggaacctgtttgtgccacaccaaatcc 34481058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 11574591 - 11574540
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  11574591 cctacactcctctaacatctcctcctcccacgcccacaatctccgcctccac 11574540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 3727314 - 3727245
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || ||||||||||||||| |||||||||| |||||||||   |||| ||| |||||||||    
T  3727314 aacatcaagcagaaaagtcctacactcctctaacatctcttcctcccacgctcacagtctccgcctccac 3727245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6264280 - 6264236
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  6264280 aaaacggaaaccttcaaggaaacctgtttgtgccacaccaaatcc 6264236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 23923092 - 23923143
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||||||||||||||||||||||||||||||  |||||| || | |||||||    
T  23923092 cctacactccgctaacatctcctcctcccacacccacaacctcctcctccac 23923143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 27324990 - 27325037
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctccca 215  Q
    ||||||||||||||| ||||||||||||||||||| | | ||||||||    
T  27324990 aacatcaagaagtaatgtcctacactccgctaacaacacttcctccca 27325037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 22095165 - 22095096
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || | || |||| ||||| |||||| |||||||||||||  ||||||||| |||||||||    
T  22095165 aacatcaagcagaagagccctaaactcctctaacaactcctcctcccacgcccacaatctccgcctccac 22095096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32918376 - 32918420
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| || |||||||||||||||| |||||| ||||||||||||    
T  32918376 aaaacggacaccttcaagggaacctgtttgtgtcacaccaaatcc 32918420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 166 - 409
Target Start/End: Complemental strand, 134771 - 134528
Alignment:
Q  166 agaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagat 265  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||       ||||  |||||||  ||    
T  134771 agaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaat 134672  T
Q  266 caacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatc 365  Q
    ||| ||| |||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||    
T  134671 caatagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatc 134572  T
Q  366 caaccaaaaccacgtatcagaaccatcaccaaccctcctagcca 409  Q
    |||||||||| |||||| ||  ||||| ||||||||||||||||    
T  134571 caaccaaaacaacgtattagctccatctccaaccctcctagcca 134528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 166 - 409
Target Start/End: Complemental strand, 312598 - 312355
Alignment:
Q  166 agaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagat 265  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||       ||||  |||||||  ||    
T  312598 agaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaat 312499  T
Q  266 caacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatc 365  Q
    ||| ||| |||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||    
T  312498 caatagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatc 312399  T
Q  366 caaccaaaaccacgtatcagaaccatcaccaaccctcctagcca 409  Q
    |||||||||| |||||| ||  ||||| ||||||||||||||||    
T  312398 caaccaaaacaacgtattagctccatctccaaccctcctagcca 312355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 166 - 409
Target Start/End: Complemental strand, 328052 - 327809
Alignment:
Q  166 agaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagat 265  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||       ||||  |||||||  ||    
T  328052 agaacatcaagaagtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaat 327953  T
Q  266 caacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatc 365  Q
    ||| ||| |||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||    
T  327952 caatagataacaagtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacctatc 327853  T
Q  366 caaccaaaaccacgtatcagaaccatcaccaaccctcctagcca 409  Q
    |||||||||| |||||| ||  ||||| ||||||||||||||||    
T  327852 caaccaaaacaacgtattagctccatctccaaccctcctagcca 327809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33630155 - 33630378
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||| | ||||||||||||||| |||||| ||| || |  || ||| | |||||| |||||||| || | ||| |||||||    
T  33630155 aaaactgaaatcttcaagggaacatgtttgtgccacaccaactccgcaacagtagtcgcaccagagtggtcctgagaggttagcacattataagcaccac 33630254  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     |||||||||||||||| | ||||||||||| ||||||||  |||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  33630255 taacagtgtatccatctgacggagcaggaagtcaaacccatctatctgaaacattcggaaacaagagaacatcaaaaaataaagccctacactccgctaa 33630354  T
Q  201 catctcctcctcccactgccacaa 224  Q
    ||||||||||||||||||||||||    
T  33630355 catctcctcctcccactgccacaa 33630378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1683098 - 1683310
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatccgcagcaggagccatactagaatagtcctgcgaggttagtacctgataggcaccac 100  Q
    |||||||||| |||||||||||||| ||||| ||||||||| |||||| ||| || |  || ||| |  ||||| |||||||| || ||||| |||||||    
T  1683098 aaaactgaaatcttcaagggaacctgtttgtaccacaccaactccgcaacagtagtcgcaccagagtgatcctgagaggttagcacatgataagcaccac 1683197  T
Q  101 gaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaa 200  Q
     || ||||||||||| | | |||| ||||||||||||| |  ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  1683198 taatagtgtatccatttgacggagtaggaagccaaaccaatctatctgaaacattcggaaataatagaacatcaagaagtaaagccctacactccgctaa 1683297  T
Q  201 catctcctcctcc 213  Q
    ||||||| |||||    
T  1683298 catctccacctcc 1683310  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 23347423 - 23347230
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| |||||||||  ||| || |||||||||||||||||| || |    
T  23347423 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctacactcatctagcaactcctcctcccactgccataacc 23347324  T
Q  227 tacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||| ||||||||||       ||||  | |||||  ||||||||||| |||||| || || |||||   ||||||||||||||||||||||||    
T  23347323 tacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaagtcggcgacggacatagacttattctctgttaactcaaacaa 23347230  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 25318005 - 25318231
Alignment:
Q  94 gcaccacgaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacact 193  Q
    ||||||||||||||||| ||| |  | ||  | |||||||| ||| |  ||||||||||||| |||  ||||  ||||||||||||||||| ||||||||    
T  25318005 gcaccacgaacagtgtaaccaccagatgggtccggaagccacacctagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacact 25318104  T
Q  194 ccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacat 293  Q
    || ||| || |||||||||||||||||| || |||||  |||||||||       ||||  | |||    ||||||||| | |||||| ||||| |||||    
T  25318105 cctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaacagatagcaagtccgccacggacat 25318204  T
Q  294 gagcttattctctgttaactcaaacaa 320  Q
     | |||||||| |||||||||||||||    
T  25318205 aaacttattctttgttaactcaaacaa 25318231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 26205499 - 26205725
Alignment:
Q  94 gcaccacgaacagtgtatccatctaaaggagcaggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacact 193  Q
    ||||||||||||||||| ||| |  | ||  | |||||||| ||| |  ||||||||||||| |||  ||||  ||||||||||||||||| ||||||||    
T  26205499 gcaccacgaacagtgtaaccaccagatgggtccggaagccacacctagctatctgaaacattaggattcaaagaaacatcaagaagtaaagccctacact 26205598  T
Q  194 ccgctaacatctcctcctcccactgccacaatctacgcctccacctccnnnnnnncccctgctgctccagatcaacagagaacaagtctgccacagacat 293  Q
    || ||| || |||||||||||||||||| || |||||  |||||||||       ||||  | |||    ||||||||| | |||||| ||||| |||||    
T  26205599 cctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaacagatagcaagtccgccacggacat 26205698  T
Q  294 gagcttattctctgttaactcaaacaa 320  Q
     | |||||||| |||||||||||||||    
T  26205699 aaacttattctttgttaactcaaacaa 26205725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 15674009 - 15674123
Alignment:
Q  127 ggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatc 226  Q
    |||||||| |||||  ||||||||||||| |||  |||   ||||||||||||||||| ||| |||||  ||| || ||||||||||||||||||||| |    
T  15674009 ggaagccacacccagctatctgaaacattaggattcaaggaaacatcaagaagtaaagccctgcactcatctagcaactcctcctcccactgccacaacc 15674108  T
Q  227 tacgcctccacctcc 241  Q
    |||| ||||||||||    
T  15674109 tacgtctccacctcc 15674123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 19255841 - 19255934
Alignment:
Q  144 atctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||||||   || ||||| ||||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  19255841 atctgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 19255934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 33640119 - 33640212
Alignment:
Q  144 atctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||||||   || ||||| ||||||||| || |||| |||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  33640119 atctgaaacattaacaagcaaaaaaacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcccacaatctccgcctccac 33640212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 503447 - 503378
Alignment:
Q  168 aacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    ||||||||| || |||| |||||||||| ||||||||||||||||||||  | ||||||| |||||||||    
T  503447 aacatcaagcagaaaagccctacactccactaacatctcctcctcccacgcctacaatctccgcctccac 503378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 5085923 - 5085873
Alignment:
Q  186 cctacactccgctaacatctcctcctcccactgccacaatctacgcctcca 236  Q
    |||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  5085923 cctacactcctctaacatctcctcctcccacgcccacaatctccgcctcca 5085873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 13085721 - 13085791
Alignment:
Q  125 caggaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactcc 195  Q
    |||||||||||| ||||| |||||||| ||  | |||||||  ||||||||| ||||||||||||||||||    
T  13085721 caggaagccaaatccaagaatctgaaatatcggtaaacaaagaaacatcaagcagtaaagtcctacactcc 13085791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 23347541 - 23347504
Alignment:
Q  8 aaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    |||||||||||||||||| |||||||||||||||||||    
T  23347541 aaaccttcaagggaacctgtttgtgccacaccaaatcc 23347504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8872908 - 8872864
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  8872908 aaaacggaaaccttcaagggaaccagtttgtgccacaccaaatcc 8872864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25317912 - 25317956
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| || |||||||||||||||| |||||||||||||||||||    
T  25317912 aaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 25317956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26205406 - 26205450
Alignment:
Q  1 aaaactgaaaccttcaagggaacctatttgtgccacaccaaatcc 45  Q
    ||||| || |||||||||||||||| |||||||||||||||||||    
T  26205406 aaaacggacaccttcaagggaacctgtttgtgccacaccaaatcc 26205450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 25036085 - 25036028
Alignment:
Q  180 taaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccac 237  Q
    |||| ||||||||||| ||| ||||||||||||||| | ||||| ||| |||||||||    
T  25036085 taaactcctacactccactaccatctcctcctcccagtcccacattctccgcctccac 25036028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 15674150 - 15674206
Alignment:
Q  264 atcaacagagaacaagtctgccacagacatgagcttattctctgttaactcaaacaa 320  Q
    |||||||||||  ||||| |||||||||||   ||||||||| ||||||||||||||    
T  15674150 atcaacagagagtaagtcggccacagacatagacttattctccgttaactcaaacaa 15674206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 4335 - 4223
Alignment:
Q  297 cttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacctatccaaccaaaaccacgtatcagaaccatcacca 396  Q
    |||||||||| ||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||  ||||| |||    
T  4335 cttattctctattaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacctatccaaccaaaacaacgtatgagctccatctcca 4236  T
Q  397 accctcctagcca 409  Q
    ||||||| |||||    
T  4235 accctccgagcca 4223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 15605 - 15492
Alignment:
Q  128 gaagccaaacccaagtatctgaaacattcggaaacaaaagaacatcaagaagtaaagtcctacactccgctaacatctcctcctcccactgccacaatct 227  Q
    ||||||| |||||  |||||||||| || |||| ||| | ||||||||  ||||||| |||||||||| ||||||| ||||||||||||  |||||||||    
T  15605 gaagccagacccatttatctgaaacgtttggaaccaacaaaacatcaaatagtaaagccctacactcctctaacatatcctcctcccacgcccacaatct 15506  T
Q  228 acgcctccacctcc 241  Q
     || | ||||||||    
T  15505 gcgacgccacctcc 15492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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