View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9736_low_2 (Length: 332)

Name: NF9736_low_2
Description: NF9736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9736_low_2
NF9736_low_2
[»] chr2 (1 HSPs)
chr2 (17-313)||(43602499-43602795)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 43602499 - 43602795
Alignment:
Q  17 acatcaaaccattgatcatgaaatgatctttcttttgaagagaaataaaacttactaagaaatatcaatggactctcccaactcacctgattttgctttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602499 acatcaaaccattgatcatgaaatgatctttcttttgaagagaaatacaacttactaagaaatatcaatggactctcccaactcacctgattttgctttt 43602598  T
Q  117 acatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctcaaaactctcatgtccaactttctcac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602599 acatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctcaaaactctcatgtccaactttctcac 43602698  T
Q  217 gcagtcttcaaaactctccagtttcatctcctcaacatcactattttcccactaagctctctgattttgagtccctacaaacaacttaccactgtgc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602699 gcagtcttcaaaactctccagtttcatctcctcaacatcactattttcccactaagctctctgattttgagtccctacaaacaacttaccactgtgc 43602795  T

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