View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_high_19 (Length: 288)
Name: NF9737_high_19
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_19 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 13933272 - 13933001
Alignment:
| Q |
17 |
agaattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaac |
116 |
Q |
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| T |
13933272 |
agaattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattctcatttttggaaatattcgatatttctgaaaatagcctaaac |
13933173 |
T |
|
| Q |
117 |
gggaagatatctgaagatattcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctg |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13933172 |
gggaagatatctgaagatattcgatttccaaccaaactaaggacactacaaatgagttcaaactctatgaatggtgtgatctctgaatttcatttttctg |
13933073 |
T |
|
| Q |
217 |
gtatgtcaatgttaaagtttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattgggtcc |
288 |
Q |
| |
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||||||||||||||||| |||||||||||| |||| |||||||||||| |||||| |||||||||||||| |
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| T |
13933072 |
gtatgtcaatgttaaaggaattagacttgtcagacaattcactagcattgagatttactgaaaattgggtcc |
13933001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 13861971 - 13862240
Alignment:
| Q |
17 |
agaattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaac |
116 |
Q |
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|||||||||||||||| |||| |||||||||| |||| ||| ||||||||||||||| | ||||||||||||||||||||||| ||||||| |||| | |
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| T |
13861971 |
agaattagatctaagctttaatcaaatcaatgggacacaacccgatctctcaatattctcccttttggaaatatttgatatttctaaaaataggctaagc |
13862070 |
T |
|
| Q |
117 |
gggaagatatctgaagatattcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctg |
216 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13862071 |
gggaagatatatgaagatattcgatttccaaccaaactaaggacactacggatgggttcgaactctatgaatggtgtgatctctgaatttcatttttctg |
13862170 |
T |
|
| Q |
217 |
gtatgtcaatgttaaagtttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattgggt |
286 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||| ||||||||||| |
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| T |
13862171 |
gtatgtcaatgttaaaggatttagacttgtcaggcaattcactagcattgagatttaacgaaaattgggt |
13862240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 14085589 - 14085343
Alignment:
| Q |
19 |
aattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgg |
118 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| || |
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| T |
14085589 |
aattagatctaagcagtaatcaaatcaatggcacactacctgatctgtcaatattctcctttttggaaatatttgatatttctgaaaatagactaaatgg |
14085490 |
T |
|
| Q |
119 |
gaagatatctgaagatattcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggt |
218 |
Q |
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||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| || |||||||||||| |
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| T |
14085489 |
gaagatacttaaagatattcgatttccaaccaaactaaggacactacggatgcattcaaactctttaaatggtgtgatctctgacttccatttttctggt |
14085390 |
T |
|
| Q |
219 |
atgtcaatgttaaagtttttagacttgtcaaacaactcactagcatt |
265 |
Q |
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||||||||| || || ||||||||||| |||| | ||||||||| |
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| T |
14085389 |
atgtcaatgctagaggagttagacttgtcttacaatttactagcatt |
14085343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 288
Target Start/End: Original strand, 13874459 - 13874712
Alignment:
| Q |
35 |
taataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgggaagatatctgaagat |
134 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||| ||||| ||||||| |
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| T |
13874459 |
taatcaaatcaatggaacactacctgatctctcaatattctcattcttggaaatatttgatatttctaaaaataagctaaacggggagatacatgaagat |
13874558 |
T |
|
| Q |
135 |
attcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaagt |
234 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13874559 |
attcggtttccaactaaactaaggacactacggatggattcaaactctttacatggtgtgatctctgaattccatttttctggtatgtcaatgttaaagg |
13874658 |
T |
|
| Q |
235 |
ttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattgggtcc |
288 |
Q |
| |
|
||||||||||| |||| ||||||| |||| |||||| ||||| ||||||| |
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| T |
13874659 |
aattagacttgtctgacaattcactagtattgagatttaccgaaaactgggtcc |
13874712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 13892147 - 13892400
Alignment:
| Q |
19 |
aattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgg |
118 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13892147 |
aattagatctaagcggtaatcaaatcaatggcacactacctgatctctcgatattctcatctttggaaatatttgatatttctgaaaatagactaaacgg |
13892246 |
T |
|
| Q |
119 |
gaagatatctgaagatattcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggt |
218 |
Q |
| |
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||||||| ||||||||||||| ||||||| | |||||||||||| ||| |||| |||||| | | ||||||||||||||| || |||||||||||| |
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| T |
13892247 |
aaagatatttgaagatattcgatttccaactacactaaggacactgagcatggattcgaactctttaagtggtgtgatctctgacttccatttttctggt |
13892346 |
T |
|
| Q |
219 |
atgtcaatgttaaagtttttagacttgtcaaacaactcactagcattgcgattt |
272 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||| ||||||||| || ||||| |
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|
| T |
13892347 |
atgtcaatgttagaggaattatccttgtcaagcaattcactagcaatgagattt |
13892400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 14026175 - 14025934
Alignment:
| Q |
47 |
tggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgggaagatatctgaagatattcgacttcca |
146 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
14026175 |
tggcacactacctgatctctcaatattcttatttttggaaatgtttgatatttctgaaaatagactaaacgggaagatatttgaagatattcgatttcca |
14026076 |
T |
|
| Q |
147 |
accaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaagtttttagacttgt |
246 |
Q |
| |
|
|| | |||| ||| ||||| |||| |||| ||| | | | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14026075 |
actacactatggatactacgaatgaattcgaacaatttaagtggtgtgatctcagaatttcatttttctggtatgtcaatgttaaaggaattagacttgt |
14025976 |
T |
|
| Q |
247 |
caaacaactcactagcattgcgatttagtgaaaattgggtcc |
288 |
Q |
| |
|
| |||| ||||| |||||| ||||| |||||||||||||| |
|
|
| T |
14025975 |
ctgacaattcacttgcattgacatttactgaaaattgggtcc |
14025934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 14111382 - 14111129
Alignment:
| Q |
35 |
taataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgggaagatatctgaagat |
134 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| |
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| T |
14111382 |
taatcaaattaacggcacactacctgatctctcaatattcccatttttggagatatttgatatttctgaaaataagctaagtgggaagatagctgaagat |
14111283 |
T |
|
| Q |
135 |
attcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaagt |
234 |
Q |
| |
|
|||| | ||||| |||||||||||||| |||| ||| ||| |||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
14111282 |
attcaatttccagccaaactaaggacattacagatgggttcgaactctatgagtggagtgatatctgaatttcatttttctggtatgtcgatgttaaagg |
14111183 |
T |
|
| Q |
235 |
ttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattgggtcc |
288 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||| |||||| ||||||| |
|
|
| T |
14111182 |
aattagacttgtctgacaattcactagcattgacatttactgaaaactgggtcc |
14111129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 14048252 - 14047983
Alignment:
| Q |
19 |
aattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgg |
118 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14048252 |
aattagatctaagcagcaatcaaattaatgggacactacctaatctctcaatattctcatttttggaaatatttgatatttctgaaaataggctaaacgg |
14048153 |
T |
|
| Q |
119 |
gaagatatctgaagatattcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggt |
218 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| | |||||||| ||| || | ||| |||||| | | ||||||||||||||| || ||||||| |||| |
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|
| T |
14048152 |
gaagatatttgaagatattcgatttccaactacactaaggatactggaattaagttcgaactctttaagtggtgtgatctctgacttccatttttatggt |
14048053 |
T |
|
| Q |
219 |
atgtcaatgttaaagtttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattgggtcc |
288 |
Q |
| |
|
||||||||||||| | ||| | ||||| |||||||| |||||||| |||||| ||||| ||||||| |
|
|
| T |
14048052 |
atgtcaatgttaagatacttatatttgtctgacaactcaatagcattgagatttaccgaaaactgggtcc |
14047983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 35 - 288
Target Start/End: Original strand, 13472156 - 13472409
Alignment:
| Q |
35 |
taataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaatagactaaacgggaagatatctgaagat |
134 |
Q |
| |
|
|||| |||| || |||||||| ||| |||| ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
13472156 |
taatcaaattaacggcacactgcctaatctttcaatattctcatttttggaaacattcgatatttctgaaaatagactcaacgggaagatatttgaagat |
13472255 |
T |
|
| Q |
135 |
attcgacttccaaccaaactaaggacactacaaatgcattcaaactctatgaatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaagt |
234 |
Q |
| |
|
|||||| ||||||| | |||||| |||||| ||| ||||||||| ||||||| |||||||| || || ||||||||||||||||||||||||| | |
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|
| T |
13472256 |
attcgatttccaactactctaaggctactacagatgggctcaaactctttgaatggcgtgatctccgacttccatttttctggtatgtcaatgttaagat |
13472355 |
T |
|
| Q |
235 |
ttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattgggtcc |
288 |
Q |
| |
|
|||| | ||||| |||||||||| |||||| |||||| ||||| ||||||| |
|
|
| T |
13472356 |
atttatatttgtctgacaactcactggcattgagatttacagaaaactgggtcc |
13472409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 14016004 - 14015913
Alignment:
| Q |
17 |
agaattagatctaagcagtaataaaatcaatggcacactacctgatctctcaatattcgcatttttggaaatatttgatatttctgaaaata |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14016004 |
agaattatatctaagcagtaataaaatcaatggcacactacctgatctctcaatattctcatttttggaaatatttcatatttctgaaaata |
14015913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 14015907 - 14015805
Alignment:
| Q |
186 |
aatggtgtgatctctgaatttcatttttctggtatgtcaatgttaaagtttttagacttgtcaaacaactcactagcattgcgatttagtgaaaattggg |
285 |
Q |
| |
|
||||||||||| || || || |||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
14015907 |
aatggtgtgatttcagacttccattttgctggtatgtcaatgttaaaggaattagacttgtcagacaattcactagcattgacatttactgaaaattggg |
14015808 |
T |
|
| Q |
286 |
tcc |
288 |
Q |
| |
|
||| |
|
|
| T |
14015807 |
tcc |
14015805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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