View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_high_27 (Length: 241)
Name: NF9737_high_27
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_27 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 10970822 - 10971045
Alignment:
| Q |
19 |
ttcacttctactaccatgacattaaaaacaaaaacaacccaacaattgtgcaaattgttaacacacccgaaaacgtgccaaatggatttggtgcaactta |
118 |
Q |
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| T |
10970822 |
ttcacttctactaccatgacattaaaaacaaaaacaacccaacaattgtgcaaattgttaacacacctgaaaacgtgcctaatggatttggtgcaactta |
10970921 |
T |
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| Q |
119 |
tgtaatg-atgatgaaatcactgaagggcctgaaatgaattcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattgga |
217 |
Q |
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| T |
10970922 |
tgtaatggatgatgaaatcactgaagggcctgaaatgagttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattgga |
10971021 |
T |
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| Q |
218 |
atgtttatgttgacaaattttatt |
241 |
Q |
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| T |
10971022 |
atgtttatgttgacaaattttatt |
10971045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 30509785 - 30509562
Alignment:
| Q |
19 |
ttcacttctactaccatgacattaaaaacaaaaacaacccaacaattgtgcaaattgttaacacacccgaaaacgtgccaaatggatttggtgcaactta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30509785 |
ttcacttctactaccatgacattaaaaacaaaaacaacccaacaattctgcaaattgttaacacacccgaaaacgtgcctaatggatttggtgcaactta |
30509686 |
T |
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| Q |
119 |
tgtaatg-atgatgaaatcactgaagggcctgaaatgaattcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattgga |
217 |
Q |
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||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30509685 |
tgtaatggatgatgaaatcactgaagggccagaaatgagttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattgga |
30509586 |
T |
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| Q |
218 |
atgtttatgttgacaaattttatt |
241 |
Q |
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| T |
30509585 |
atgtttatgttgacaaattttatt |
30509562 |
T |
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Back To:
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