View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_high_3 (Length: 541)
Name: NF9737_high_3
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 4721207 - 4720878
Alignment:
| Q |
20 |
atgagattgtaccttgatcatgatgctgagtcacacttatatagttggggatatgttgataactgcctctaggttttgaaagcggttagagatgattctg |
119 |
Q |
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| T |
4721207 |
atgagattgtactttgatcatgatgttgagtcacacttatatagtcgag--tatgttgataactgcctctaggttttgaaagccgctagagatgattctg |
4721110 |
T |
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| Q |
120 |
atggctaggattaatcctgacgcgctccagcactgcaatacgcacagggcttcccgtgcaccttcgtggtgcttttctttgaagaatatgtgccttgtct |
219 |
Q |
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| T |
4721109 |
acggctaggattaatcctgacgcgctccagcactgcaatacgcacagggcttcccgtgcaccttcgtggtgcttttctttgaagaatatgtgccttgtct |
4721010 |
T |
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| Q |
220 |
tcattgggatattcattcacacttggccttatgccggtttggtttggaacaactttcatttgcaaattgcaagtaccgtgcatggaatctgctgttgata |
319 |
Q |
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| T |
4721009 |
tcattgggata----ttcacacttggccttatgccggtttggtttggaacaactttcatttgcaaattgcaagtaccgtgcatggaatctgttgttgata |
4720914 |
T |
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| Q |
320 |
ggggcaagtcttgatcattttcacgtattctttttt |
355 |
Q |
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| T |
4720913 |
ggggcaagtcttgatcattttcacgtattatttttt |
4720878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 4720484 - 4720377
Alignment:
| Q |
350 |
ttttttatggaccaaataacaattggaaaattgttgttgacacttaaaataaaggttgaaaaacaccagtaaaatatgtaaata-tccctcagtagttaa |
448 |
Q |
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| T |
4720484 |
ttttttatggaccaaataacaattggaaaattgttgttgacacttaacataaaggttgaaaaacaccagtaaaatacataaataccccctcggtagttaa |
4720385 |
T |
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| Q |
449 |
ccatcaaa |
456 |
Q |
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| T |
4720384 |
ccaccaaa |
4720377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 22494812 - 22494873
Alignment:
| Q |
373 |
tggaaaattgttgttgacacttaaaataaaggttgaaaaacaccagtaaaatatgtaaatatc |
435 |
Q |
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| T |
22494812 |
tggaaaattgttgttgacacttaacagaa-ggctgaaaaacaccagtaaaatacgtaaatatc |
22494873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 9428881 - 9428940
Alignment:
| Q |
375 |
gaaaattgttgttgacacttaaaataaaggttgaaaaacaccagtaaaatatgtaaatatc |
435 |
Q |
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| T |
9428881 |
gaaaattgttgttgacacttcacataa-ggttgaaaaacaccaataaaatacgcaaatatc |
9428940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 506
Target Start/End: Complemental strand, 251462 - 251417
Alignment:
| Q |
461 |
atgcgtcctttatacaaaaatagaagcatcattttcatatcagttt |
506 |
Q |
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| T |
251462 |
atgcgtcctttatacataaacataagcatcagtttcatatcagttt |
251417 |
T |
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