View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_high_36 (Length: 202)
Name: NF9737_high_36
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 25601873 - 25602048
Alignment:
| Q |
19 |
gtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataa |
118 |
Q |
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| T |
25601873 |
gtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaacatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataa |
25601972 |
T |
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| Q |
119 |
ttcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttcttcatctcac |
194 |
Q |
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| T |
25601973 |
ttcccaactccacgaattaggagtctatgttaggggtgatagtgatctcattctccaatgtgtttcttcatgtcac |
25602048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 25597117 - 25597252
Alignment:
| Q |
59 |
tgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgat |
158 |
Q |
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| T |
25597117 |
tgatggtaatatcccgtctgaactcctcaaaaagatattagactatgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgat |
25597216 |
T |
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| Q |
159 |
aatgatctcattctccaatgtgtttcttcatctcac |
194 |
Q |
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| T |
25597217 |
agtggtctcattcttcattgtgtttcttcatgtcac |
25597252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 36636843 - 36636745
Alignment:
| Q |
42 |
gctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
140 |
Q |
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| T |
36636843 |
gctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaaactatgtttcctcccataatacccacctccaggatttagga |
36636745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
| Q |
27 |
tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac |
126 |
Q |
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|||||| ||||| |||| |||||| |||||||| |||||||| |||||||| |||| ||||||||||| || ||||||||||| ||||| |||| | |
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| T |
36613268 |
tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc |
36613169 |
T |
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| Q |
127 |
tcca |
130 |
Q |
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|||| |
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| T |
36613168 |
tcca |
36613165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 36643505 - 36643440
Alignment:
| Q |
75 |
cctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
140 |
Q |
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| T |
36643505 |
cctcaactccttaaaaagattttaaattatatttgctcccataatacccacctccacgaattagga |
36643440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
| Q |
73 |
agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga |
140 |
Q |
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| T |
36909764 |
agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga |
36909831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 19658262 - 19658151
Alignment:
| Q |
19 |
gtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataa |
118 |
Q |
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|||||| |||| ||||||| | || |||||||||||| || ||||| |||| |||||||| |||| |||||||||||| | ||||||| ||| ||||| |
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| T |
19658262 |
gtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataa |
19658163 |
T |
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| Q |
119 |
ttcccaactcca |
130 |
Q |
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| |||| ||||| |
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| T |
19658162 |
tacccacctcca |
19658151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 19675101 - 19674990
Alignment:
| Q |
19 |
gtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataa |
118 |
Q |
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|||||| |||| ||||||| | || |||||||||||| || ||||| |||| |||||||| |||| |||||||||||| | ||||||| ||| ||||| |
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| T |
19675101 |
gtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttagattatgtttgctcacataa |
19675002 |
T |
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| Q |
119 |
ttcccaactcca |
130 |
Q |
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| |||| ||||| |
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| T |
19675001 |
tacccacctcca |
19674990 |
T |
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