View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_high_6 (Length: 443)
Name: NF9737_high_6
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 94 - 426
Target Start/End: Complemental strand, 5651482 - 5651150
Alignment:
| Q |
94 |
catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5651482 |
catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa |
5651383 |
T |
|
| Q |
194 |
ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcct |
293 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5651382 |
ttggcgactctggatgacttgcaattgtgaagcctagtattttcgacaaccctgcagtagccaatgcatcagaatcaaagttcttaaattataaaatcct |
5651283 |
T |
|
| Q |
294 |
tgttttatactggcaaaggcataaataaacatcaattcaaactgttgtgtgcaagccaaattgtggacactactgcgatacagttccattcatgacagta |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5651282 |
tgttttatactggcaaaggcataaataaacatcaattcaaactgttgtgtgcaagccaaattgtggacactgctgcgatacagttccattcatgacagta |
5651183 |
T |
|
| Q |
394 |
gcaatgagatcaaaccctacctttccataaaac |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
5651182 |
gcaatgagatcaaaccctacctttccataaaac |
5651150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 94 - 332
Target Start/End: Complemental strand, 22965810 - 22965570
Alignment:
| Q |
94 |
catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
22965810 |
catcttcagactgcatttcttacatgctcggcaatattttcaagcagctgtaggttatctttcaaagaacccattgaattccttaaaatcaaataaacaa |
22965711 |
T |
|
| Q |
194 |
ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcct |
293 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22965710 |
ttggcgactctggatgacttgcagttgtgaagcctggtatttttgacagccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcaa |
22965611 |
T |
|
| Q |
294 |
tgttttata--ctggcaaaggcataaataaacatcaattca |
332 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
22965610 |
tgttttatacgctggcaaaggcataaataaacatcaattca |
22965570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 22965574 - 22965532
Alignment:
| Q |
381 |
attcatgacagtagcaatgagatcaaaccctacctttccataa |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
22965574 |
attcatgacagtagcaatgagatcaaaccctccctctccataa |
22965532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 94 - 332
Target Start/End: Original strand, 38954113 - 38954353
Alignment:
| Q |
94 |
catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||| |||||||||||| |
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|
| T |
38954113 |
catcttcagactgcatttcttacatgctcggcaatattttcaagcagctgtaggttatctttcaaagaacccattgaattccttaaaatcaaataaacaa |
38954212 |
T |
|
| Q |
194 |
ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcct |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38954213 |
ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacacccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcaa |
38954312 |
T |
|
| Q |
294 |
tgttttata--ctggcaaaggcataaataaacatcaattca |
332 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38954313 |
tgttttatacgctggcaaaggcataaataaacatcaattca |
38954353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 38954349 - 38954391
Alignment:
| Q |
381 |
attcatgacagtagcaatgagatcaaaccctacctttccataa |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38954349 |
attcatgacagtagcaatgagatcaaaccctccctttccataa |
38954391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 21422565 - 21422714
Alignment:
| Q |
110 |
ttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaattggcgactctggatg |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
21422565 |
ttcttacacgttcggcaatattttcaagcaggcgtaggtcatcattcaaagaacccgttgacttctttaatctcaaataaacaattggtgactctggatg |
21422664 |
T |
|
| Q |
210 |
acttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatg |
259 |
Q |
| |
|
||| ||||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
21422665 |
actcgcaatcgtgaagcctggtatttccaacaaccctgcagtagccaatg |
21422714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 30633837 - 30633986
Alignment:
| Q |
110 |
ttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaattggcgactctggatg |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
30633837 |
ttcttacacgttcggcaatattttcaagcaggcgtaggtcatcattcaaagaacccgttgacttctttattctcaaataaacaattggtgactctggatg |
30633936 |
T |
|
| Q |
210 |
acttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatg |
259 |
Q |
| |
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||| |||| |||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
30633937 |
actcacaatcgtgaagcctggtatttccaacaaccctgcagtagccaatg |
30633986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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