View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9737_high_7 (Length: 413)
Name: NF9737_high_7
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 13287514 - 13287908
Alignment:
| Q |
1 |
aggtagtaagtaataggaacttgacctttttcatgcgaactccttggaggctaagctccagttgactctctaggtcttgtaggtttctgatactcaaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13287514 |
aggtagtaagtaataggaacttgacctttttcatgcgaactccttgtaggctaagttccagctgactctctaggtcttgtaggtttctgatactcaaacc |
13287613 |
T |
|
| Q |
101 |
ataaagctgttctcccatcaactgcctatgagctcaaaatgttagtgttctcatacatggagcttaatgaatagaaatattg--aaaaaatgctgaatga |
198 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13287614 |
ataaagctgttctcccatcaattgcctatgagctcaaaatgttagtgctctcatacaaggagcttaatgaatagaaatattgaaaaaaaatgctgaatga |
13287713 |
T |
|
| Q |
199 |
attagttgaaggttgtacctatggttttcctgtagactttgtagttgttgccttaaaatctcagcctccctttgccaaaactatcagttagttatcaagt |
298 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| | ||||||||||| |
|
|
| T |
13287714 |
attagttgaaggttttacctatggttttcttgtagactttgtagttgctgccttaaaatgtctgcctccctttgccaaaacta----tgagttatcaagt |
13287809 |
T |
|
| Q |
299 |
aaaataatgtcaatggttaatgaaaaggaaacaaaatgtgattggctgatattcaactggacctactatcagatatgaaatgtgaatcacagtaatttt |
397 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13287810 |
aaaataatgtcaatggttaatgaaacggaaagaaaatgtgattggctgatattcaactgaacctactatcagatatgaaatgtgaatcacagtaatttt |
13287908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University