View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9737_high_8 (Length: 409)
Name: NF9737_high_8
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 29547755 - 29547371
Alignment:
| Q |
18 |
tcttgattgtttgaccaaagtgtaaaggtctccaacaaaatccaagttactcaatgagcattcttgtaaaagctctttaaaattctgaacaatgtttagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29547755 |
tcttgattgtttgaccaaagtgtaaaggtctccaacaaaatccaagttactcaatgagcattcttgtaaaagctctttaaaattctgaacaatgtttagc |
29547656 |
T |
|
| Q |
118 |
atcacagaggtttcccccaattttcagtttgagacaataatattaaaatccccaaatactaaccagttagaattaacatatgacaaattctataaggatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29547655 |
atcacagaggtttcccccaattttcagtttgagacaataatattaaaatccccaaatactaaccagttagaattaacataacacaaattctataaggatt |
29547556 |
T |
|
| Q |
218 |
ttattaaattgcaggtgggatcnnnnnnnnacctttctcaggatgaccataaattccgctaactctccaattcagagttagtactatcagttataatcat |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29547555 |
ttattaaattgcaggtgggatcttttttttacctttctcaggatgaccataaattccgctaactctccaattcagagttagtactatcagttataatcat |
29547456 |
T |
|
| Q |
318 |
atagaatatggtttagagacatacctctaatgtcaatgttaactgtgttgttccataagcaagacaagccaacaactctctgctt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29547455 |
atagaatatggtttagagacatacctctaatgtcaatgttaactgtattgttccataagcaagacaagccaacaactctatgctt |
29547371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University