View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9737_low_1 (Length: 766)

Name: NF9737_low_1
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9737_low_1
NF9737_low_1
[»] chr5 (4 HSPs)
chr5 (62-657)||(35802663-35803253)
chr5 (115-655)||(10520559-10521109)
chr5 (375-627)||(35854083-35854332)
chr5 (622-657)||(35851949-35851984)
[»] chr4 (14 HSPs)
chr4 (98-225)||(55705573-55705700)
chr4 (98-207)||(45878670-45878779)
chr4 (155-218)||(54304053-54304116)
chr4 (615-657)||(45862515-45862557)
chr4 (580-657)||(47292731-47292808)
chr4 (532-657)||(56209299-56209425)
chr4 (259-298)||(45879155-45879194)
chr4 (104-199)||(56208877-56208972)
chr4 (561-613)||(45862385-45862437)
chr4 (98-166)||(47293221-47293289)
chr4 (531-597)||(45881915-45881981)
chr4 (615-657)||(45882075-45882117)
chr4 (440-514)||(54303766-54303840)
chr4 (150-207)||(45860206-45860263)
[»] chr8 (2 HSPs)
chr8 (98-225)||(7972415-7972542)
chr8 (576-652)||(7962514-7962590)
[»] chr2 (2 HSPs)
chr2 (98-199)||(24354011-24354112)
chr2 (513-609)||(24351088-24351184)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 62 - 657
Target Start/End: Original strand, 35802663 - 35803253
Alignment:
Q  62 attgtcaaggttaaagtattgagagagtgttcctcgaattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtat 161  Q
    ||||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  35802663 attgtcaaggttaaagttttgagaaaccgttcctcgaattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtat 35802762  T
Q  162 cctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaagagaactgactgctgcccacattgatagagatgcatgaagaccac 261  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||| |||  ||||| ||||  |||||||||||| | |||    
T  35802763 cctgcacttgttgccgcatcagacattgaagcaatgacgggtttttttgaagcaagagatctgattgcctcccacgttgactgagatgcatgaaaatcac 35802862  T
Q  262 ctccttgactgtcaattcggataatagcagccttgaannnnnnngactctttgaccatatcaatcttcttaatgatattacttgtgacgc---cacaacg 358  Q
    |||||  ||||||||| |||| |||| | ||||||||       || |||||||||||| ||||||||| ||||| |||||||||||||    ||| |      
T  35802863 ctcctacactgtcaatccggacaataaccgccttgaatttttttgaatctttgaccataccaatcttctcaatgaaattacttgtgacgatgtcactatc 35802962  T
Q  359 catggcctctgaggaccggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaa 458  Q
    ||| | | ||||||  ||||||||||||||||||||||||||||||   |||||||| ||    ||||||||||| ||||||||||||| ||| ||||||    
T  35802963 catagtccctgaggctcggatgatggctatttgttctttagcctct---gatattcccaca---gtccattttctgactttagagtattttctaaaagaa 35803056  T
Q  459 atcatagg---gagtgatttcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcatttttta 555  Q
    ||||||||   ||||||||||||||||||||||  |||||||||||||||||| ||||||||||    |||||| ||||||||||||||||| | ||| |    
T  35803057 atcataggagggagtgatttcaccccaagtctc--cttcaagagagtgataacatcatcatcata---cactaagcttgatatgaaaccctcttctttca 35803151  T
Q  556 gtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaatagat 655  Q
    ||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35803152 gtttatctaatcgataaacaccttcatttatgaagttttgaacttcttctcttttcttccctctagaagaagagactttatccagccaatttgaatagat 35803251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 115 - 655
Target Start/End: Complemental strand, 10521109 - 10520559
Alignment:
Q  115 taagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaa----------gcaatgacgggtt 204  Q
    ||||||||||||||||||||  ||| |||||  |||||||||||||||||||| ||| ||| |||||||||||||||          |||| ||||||||    
T  10521109 taagattttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaaagacattgaagcaacgacgggtt 10521010  T
Q  205 tttcggaagcaagagaactgactgctgcccacattgatagagatgcatgaagaccacctccttgactgtcaattcggataatagcagccttgaannnnnn 304  Q
    |||| | || |||||| |||| | ||  ||||||| |  ||||  || ||| | ||||||||  ||||||||||||||||||| |||||||||           
T  10521009 tttccgcaggaagagacctgatttctttccacattaactgagaatcacgaacatcacctcctgtactgtcaattcggataataacagccttgatttcttt 10520910  T
Q  305 ngactctttgaccatatcaatcttcttaatgatattacttgtgacgccaca---acgcatggcctctgaggaccggatgatggctatttgttctttagcc 401  Q
     ||| ||||||||||| ||||||||| |||||  |||||||||||   |     || ||| | | |||||   ||||||||||||||||||||||| |||    
T  10520909 tgacgctttgaccataccaatcttctcaatgaacttacttgtgacaatatccgtacccatagtccctgagactcggatgatggctatttgttctttcgcc 10520810  T
Q  402 tcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatttcacccc---aagtctctccttcaaga 498  Q
    |||   |||||||||||    ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||   |||||||| |||||| |    
T  10520809 tct---gatattccaaca---gtccattttctaactttagagtatttttcaaaagaaatcatagggagtgatttcacccccccaagtctcttcttcaaca 10520716  T
Q  499 gagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaac 598  Q
    || ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  10520715 gattgataacctcatgatcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaac 10520616  T
Q  599 ttcttctcttctcttccctctagaagaagagactttatccagccaatttgaatagat 655  Q
    ||||||||||||||||||||||  | ||||| |||| ||||||||||||||| ||||    
T  10520615 ttcttctcttctcttccctctaagataagagtctttctccagccaatttgaacagat 10520559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 375 - 627
Target Start/End: Complemental strand, 35854332 - 35854083
Alignment:
Q  375 cggatgatggctatttgttctttagcctcttctgatattccaacgaccgtccattttctaactttagagtattctctgaaagaaatcatagggagtgatt 474  Q
    ||||||||||| ||||||||||||||||||   |||||| | ||    |||||||||||  |||||||||||| ||| ||||||||||||||||||||||    
T  35854332 cggatgatggcaatttgttctttagcctct---gatattgccaca---gtccattttctgcctttagagtattttctaaaagaaatcatagggagtgatt 35854239  T
Q  475 tcaccccaagtctctccttcaagagagtgataacgtcatcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgat---- 570  Q
    | |||||||| ||||||||||||||||| ||||| ||||||||   || |||||| ||||||||||||||||| | ||| |||||||||| | |||        
T  35854238 taaccccaagcctctccttcaagagagttataacctcatcatc---atacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaac 35854142  T
Q  571 --aaacaccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaag 627  Q
      ||||||||||||||| ||||| || ||||||||||||| |||||||| |||||||||    
T  35854141 agaaacaccttcatttatgaagtcttgaacttcttctcttttcttccctatagaagaag 35854083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 657
Target Start/End: Complemental strand, 35851984 - 35851949
Alignment:
Q  622 aagaagagactttatccagccaatttgaatagatat 657  Q
    |||||||||||||| |||||||||||||||||||||    
T  35851984 aagaagagactttaaccagccaatttgaatagatat 35851949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 55705700 - 55705573
Alignment:
Q  98 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 197  Q
    ||||||||||||||| ||||||||||||||||| ||  |||| ||||| ||||||||||| ||||||||| | | |||||| ||| ||||||||||||||    
T  55705700 aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgcactggctgccacgtcatacattgaagcaatg 55705601  T
Q  198 acgggtttttcggaagcaagagaactga 225  Q
    || ||||||| || ||||||||| ||||    
T  55705600 acaggtttttgggcagcaagagacctga 55705573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 45878670 - 45878779
Alignment:
Q  98 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 197  Q
    ||||||||||||||| || ||| ||||||| || |||| ||| ||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  45878670 aattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaatg 45878769  T
Q  198 acgggttttt 207  Q
    || |||||||    
T  45878770 actggttttt 45878779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 54304116 - 54304053
Alignment:
Q  155 gtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggtttttcggaagcaaga 218  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  54304116 gtagtatcctgcacttgttgccacatcagatattgaagcaatgatgggtttttcggcagcaaga 54304053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 615 - 657
Target Start/End: Original strand, 45862515 - 45862557
Alignment:
Q  615 cctctagaagaagagactttatccagccaatttgaatagatat 657  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45862515 cctctagaagaagagactttatccagccaatttgaatagatat 45862557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 657
Target Start/End: Complemental strand, 47292808 - 47292731
Alignment:
Q  580 catttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaatagatat 657  Q
    |||||| |||||||||||  |||||||||||||| | | |||||||||| || |||||||||||||||||||| ||||    
T  47292808 catttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatat 47292731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 657
Target Start/End: Original strand, 56209299 - 56209425
Alignment:
Q  532 ttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttctt-ctcttctcttccctctagaagaagaga 630  Q
    |||||||||||||||| | ||  ||| ||| | ||||||| ||||| ||||||| ||| || ||||  |||| || || |||| ||||| | ||||||||    
T  56209299 ttgatatgaaaccctcttcttccagtctatttgcttgatagacaccatcatttatgaaattgtcaatatctttctattttctttcctcttgcagaagaga 56209398  T
Q  631 ctttatccagccaatttgaatagatat 657  Q
    ||||||| |||||||||||||||||||    
T  56209399 ctttatcgagccaatttgaatagatat 56209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 45879155 - 45879194
Alignment:
Q  259 cacctccttgactgtcaattcggataatagcagccttgaa 298  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  45879155 cacctcctggactgtcaattcggataatagcagccttgaa 45879194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 56208877 - 56208972
Alignment:
Q  104 accagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgac 199  Q
    ||||||||| |||||||||||||| || |||  ||| ||||| |||||||||| ||||||| || ||| || || || |||||| |||||||||||    
T  56208877 accagttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac 56208972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 613
Target Start/End: Original strand, 45862385 - 45862437
Alignment:
Q  561 tctacttgataaacaccttcatttacgaagttttcaacttcttctcttctctt 613  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||||| ||||    
T  45862385 tctacttgatagacaccttcatttatgaagttctcaacatcttctcttttctt 45862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 47293289 - 47293221
Alignment:
Q  98 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgc 166  Q
    ||||||||||||||| |||||||||||||| || |||  ||| || || ||||||| ||||||||||||    
T  47293289 aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctgc 47293221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 597
Target Start/End: Original strand, 45881915 - 45881981
Alignment:
Q  531 cttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa 597  Q
    |||| |||||||||||| | ||| ||| | ||||||||||| ||||||||||||| |||||| ||||    
T  45881915 cttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagttctcaa 45881981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 657
Target Start/End: Original strand, 45882075 - 45882117
Alignment:
Q  615 cctctagaagaagagactttatccagccaatttgaatagatat 657  Q
    |||||||  ||||| ||||||||||||||||||||||||||||    
T  45882075 cctctagcggaagatactttatccagccaatttgaatagatat 45882117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 54303840 - 54303766
Alignment:
Q  440 agagtattctctgaaagaaatcatagggagtgatttcaccccaagtctctccttcaagagagtgataacgtcatc 514  Q
    |||||||||| |||||||||  | ||| ||||||||||||||||| || |||||||||   |||||||| |||||    
T  54303840 agagtattctttgaaagaaacaaaaggcagtgatttcaccccaagcctttccttcaagttggtgataacatcatc 54303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 45860206 - 45860263
Alignment:
Q  150 gccatgtagtatcctgcatttgttgccacatcagacattgaagcaatgacgggttttt 207  Q
    ||||| ||||||||| || | | ||||||||||||||||||||||||||  |||||||    
T  45860206 gccatatagtatcctccactagctgccacatcagacattgaagcaatgattggttttt 45860263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 7972415 - 7972542
Alignment:
Q  98 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 197  Q
    ||||||||||||||| ||||| |||||||| || |||  ||| || || ||||||||||||||||||||  |  |||||| |||||||||  |||||||     
T  7972415 aattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaata 7972514  T
Q  198 acgggtttttcggaagcaagagaactga 225  Q
    || ||||||| |||||||||||| ||||    
T  7972515 actggttttttggaagcaagagacctga 7972542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 7962514 - 7962590
Alignment:
Q  576 ccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaata 652  Q
    |||||||||| ||| |||||||  |||||| || |||| ||  ||||||||||||| ||||||||||||||||||||    
T  7962514 ccttcatttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaata 7962590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 24354112 - 24354011
Alignment:
Q  98 aattgaaccagttaaagtaagattttctgctacgatagttccggctccgattgccatgtagtatcctgcatttgttgccacatcagacattgaagcaatg 197  Q
    ||||||||||||||| |||||| ||||||| || ||||   | | ||| |||||||||||||||||| || ||| ||||||||||| ||| |||||||||    
T  24354112 aattgaaccagttaaggtaagactttctgcaacaatagcatcagttcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaatg 24354013  T
Q  198 ac 199  Q
    ||    
T  24354012 ac 24354011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 609
Target Start/End: Complemental strand, 24351184 - 24351088
Alignment:
Q  513 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttc 609  Q
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T  24351184 tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagttctcaatatcttctcttc 24351088  T

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