View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9737_low_10 (Length: 408)
Name: NF9737_low_10
Description: NF9737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9737_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 65 - 395
Target Start/End: Complemental strand, 30413606 - 30413273
Alignment:
| Q |
65 |
gctaaatcgtctctggctatgcttgaaggtatttgttgacaaggctggaacgagaagtgacatcccaagcattgacaagaaaaagtaagatgttgtctgt |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30413606 |
gctaaatcgtctctggctatacttgaaggtatttgttgacaaagctggaacgagaagtgacatcccaagcattgacaagaaaaagtaagatgttgtctgt |
30413507 |
T |
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| Q |
165 |
cctaatattgaaagagttagatttaaannnnnnnatcatattttcttaacattattatttatgtaaagttgcaaaataatttggccataccaaaaaatta |
264 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30413506 |
cctaatattgaatgagttagatttaattttttttatcatattttcttaacattattatttatgtaaagttgcaaaataatttggccataccaaaaaatta |
30413407 |
T |
|
| Q |
265 |
aatcaaataagttaaagcattatacaagtagtttatgaagcttggctataagctatttagtatgtcatgatacccgtgtgaaaagattattctatttaat |
364 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
30413406 |
aatcaaataagttaaagcactatacaagtagtttatgaagcttggctataagctatttagtatgtcatgatacccgtttgaaatgattattctatttaat |
30413307 |
T |
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| Q |
365 |
---actaattaccataacttaataaggatgttct |
395 |
Q |
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||||||||||||||||||||||| ||||||| |
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| T |
30413306 |
actactaattaccataacttaataagaatgttct |
30413273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 46032120 - 46032075
Alignment:
| Q |
221 |
atttatgtaaagttgcaaaataatttggccataccaaaaaattaaa |
266 |
Q |
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| T |
46032120 |
atttatgtattgttgctaaataatttggccataccaaaaaaataaa |
46032075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 65 - 395
Target Start/End: Original strand, 528286 - 528604
Alignment:
| Q |
65 |
gctaaatcgtctctggctatgcttgaaggtatttgttgacaaggctggaacgagaagtgacatcccaagcattgacaagaaaaagtaagatgttgtctgt |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
528286 |
gctaaatcgtctctggctatgcttgaaggtatttgttgacaaggctggaacgagaagtgacatcccaagcattgacaagaaaaagtaagatgttgtctgt |
528385 |
T |
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| Q |
165 |
cctaatattgaaagagttagatttaaannnnnnnatcatattttcttaacattattatttatgtaaagttgcaaaataatttggccataccaaaaaatta |
264 |
Q |
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||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
528386 |
cctaatactgaatgagttagattt-aatttttttatcatattttcttaacattattatttatgtaaagttgcaaaataatttggccataccaaaaaa--- |
528481 |
T |
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| Q |
265 |
aatcaaataagttaaagcattatacaagtagtttatgaagcttggctataagctatttagtatgtcatgatacccgtgtgaaaagattattctatttaa- |
363 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
528482 |
-----------ttaaagcactatacaagtagtttatgaagcttggctataagctatttagtatgtcatgatacccgtatgaaatgattattctatttaat |
528570 |
T |
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| Q |
364 |
--tactaattaccataacttaataaggatgttct |
395 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
528571 |
actactaattaccataacttaataaggatgttct |
528604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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